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dr. M.S. (Matthijs) Berends
2022-08-21 16:37:20 +02:00
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R/random.R
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@ -25,8 +25,7 @@
#' Random MIC Values/Disk Zones/RSI Generation
#'
#' These functions can be used for generating random MIC values and disk diffusion diameters, for AMR data analysis practice. By providing a microorganism and antimicrobial agent, the generated results will reflect reality as much as possible.
#' @inheritSection lifecycle Stable Lifecycle
#' These functions can be used for generating random MIC values and disk diffusion diameters, for AMR data analysis practice. By providing a microorganism and antimicrobial agent, the generated results will reflect reality as much as possible.
#' @param size desired size of the returned vector. If used in a [data.frame] call or `dplyr` verb, will get the current (group) size if left blank.
#' @param mo any [character] that can be coerced to a valid microorganism code with [as.mo()]
#' @param ab any [character] that can be coerced to a valid antimicrobial agent code with [as.ab()]
@ -39,21 +38,20 @@
#' @name random
#' @rdname random
#' @export
#' @inheritSection AMR Read more on Our Website!
#' @examples
#' random_mic(100)
#' random_disk(100)
#' random_rsi(100)
#' random_mic(25)
#' random_disk(25)
#' random_rsi(25)
#'
#' \donttest{
#' # make the random generation more realistic by setting a bug and/or drug:
#' random_mic(100, "Klebsiella pneumoniae") # range 0.0625-64
#' random_mic(100, "Klebsiella pneumoniae", "meropenem") # range 0.0625-16
#' random_mic(100, "Streptococcus pneumoniae", "meropenem") # range 0.0625-4
#' random_mic(25, "Klebsiella pneumoniae") # range 0.0625-64
#' random_mic(25, "Klebsiella pneumoniae", "meropenem") # range 0.0625-16
#' random_mic(25, "Streptococcus pneumoniae", "meropenem") # range 0.0625-4
#'
#' random_disk(100, "Klebsiella pneumoniae") # range 8-50
#' random_disk(100, "Klebsiella pneumoniae", "ampicillin") # range 11-17
#' random_disk(100, "Streptococcus pneumoniae", "ampicillin") # range 12-27
#' random_disk(25, "Klebsiella pneumoniae") # range 8-50
#' random_disk(25, "Klebsiella pneumoniae", "ampicillin") # range 11-17
#' random_disk(25, "Streptococcus pneumoniae", "ampicillin") # range 12-27
#' }
random_mic <- function(size = NULL, mo = NULL, ab = NULL, ...) {
meet_criteria(size, allow_class = c("numeric", "integer"), has_length = 1, is_positive = TRUE, is_finite = TRUE, allow_NULL = TRUE)