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new, automated website
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@ -27,21 +27,7 @@ This data set is based on \href{https://www.eucast.org/expert_rules_and_expected
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All reference data sets (about microorganisms, antibiotics, R/SI interpretation, EUCAST rules, etc.) in this \code{AMR} package are publicly and freely available. We continually export our data sets to formats for use in R, SPSS, SAS, Stata and Excel. We also supply flat files that are machine-readable and suitable for input in any software program, such as laboratory information systems. Please find \href{https://msberends.github.io/AMR/articles/datasets.html}{all download links on our website}, which is automatically updated with every code change.
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}
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\section{Read more on Our Website!}{
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On our website \url{https://msberends.github.io/AMR/} you can find \href{https://msberends.github.io/AMR/articles/AMR.html}{a comprehensive tutorial} about how to conduct AMR data analysis, the \href{https://msberends.github.io/AMR/reference/}{complete documentation of all functions} and \href{https://msberends.github.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
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}
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\examples{
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\donttest{
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if (require("dplyr")) {
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intrinsic_resistant \%>\%
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mutate(mo = mo_name(mo),
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ab = ab_name(mo))
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filter(ab == "Vancomycin" & mo \%like\% "Enterococcus") \%>\%
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pull(mo)
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#> [1] "Enterococcus casseliflavus" "Enterococcus gallinarum"
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}
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}
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head(intrinsic_resistant)
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}
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\keyword{datasets}
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