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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9026</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9028</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -210,42 +210,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 128 1 0.01 0.002 0.01 4 8 0.01 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 8 0.5 2 0.0625 8 2 128 4 0.5 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.005 0.005 0.125 4 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 0.125 2 0.001 16 >=128 2 32 64 2 0.5 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 1 8 0.002 0.25 64 2 32 0.002 0.25 0.025 0.5 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 16 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 34 40 10 14 49 42 17 17 16 44 22 9 24 40 25 8 47 47 38 17 42 41 41 32</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 37 43 42 43 44 38 14 25 37 9 10 49 34 17 50 43 9 19 45 42 18 17 43 26 31</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S R I I S I S I S R I S I I S I I R S R R S R R R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I S I S S I S R S S I S S R I R S R I S I S R S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.025 4 0.005 0.01 1 32 32 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 0.25 32 2 0.5 0.002 0.5 2 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 32 64 <=0.001 0.01 2 8 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 32 2 64 0.5 0.025 32 0.01 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 8 0.002 0.5 0.01 0.01 <=0.001 0.125 8 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 16 4 32 0.01 0.25 0.25 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 >=16 0.25 0.5 0.25 4 2 8 1 8 2 0.5 1 8 0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 >=16 0.5 0.5 1 8 0.5 >=16 4 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 1 8 >=16 4 4 8 1 4 8 1 >=16 2 4 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=16 8 8 >=16 2 4 2 4 8 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.5 <=0.125 <=0.125 <=0.125 0.25 0.25 <=0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 1 2 2 4 <=0.125 2 <=0.125 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 0.5 2 2 <=0.125 0.5 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 2 0.5 1 0.125 4 0.25 4 4 0.5 0.25 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 8 0.25 0.5 0.125 8 4 0.5 0.125 0.125 2 0.25 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 41 32 19 38 41 38 37 32 49 38 33 50 44 14 10 47 32 18 29 13 42 22 24 48</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 11 43 16 49 47 41 41 23 28 26 35 44 19 50 43 36 20 45 46 14 50 40 8 17</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 14 13 16 12 16 16 12 14 15 17 13 14 12 16 12 11 14 17 16 17 13 11 13 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 14 14 13 14 11 11 17 16 15 13 14 11 16 11 13 12 13 17 16 17 12 17 11 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 18 24 27 26 24 15 19 17 19 21 15 27 22 26 23 15 25 22 21 17 24 24 15 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 26 27 21 18 19 22 19 19 15 23 23 24 19 17 19 20 21 19 21 22 23 16 19 23</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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