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dr. M.S. (Matthijs) Berends
2023-05-27 10:39:22 +02:00
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@ -9,7 +9,7 @@
# Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C #
# (2022). AMR: An R Package for Working with Antimicrobial Resistance #
# Data. Journal of Statistical Software, 104(3), 1-31. #
# doi:10.18637/jss.v104.i03 #
# https://doi.org/10.18637/jss.v104.i03 #
# #
# Developed at the University of Groningen and the University Medical #
# Center Groningen in The Netherlands, in collaboration with many #
@ -164,6 +164,15 @@
#' @seealso [as.mo()] [microorganisms]
#' @examples
#' microorganisms.codes
#'
#' # 'ECO' or 'eco' is the WHONET code for E. coli:
#' microorganisms.codes[microorganisms.codes$code == "ECO", ]
#'
#' # and therefore, 'eco' will be understood as E. coli in this package:
#' mo_info("eco")
#'
#' # works for all AMR functions:
#' mo_is_intrinsic_resistant("eco", ab = "vancomycin")
"microorganisms.codes"
#' Data Set with `r format(nrow(example_isolates), big.mark = " ")` Example Isolates