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global var fix

This commit is contained in:
2019-02-27 17:39:39 +01:00
parent 642f6571fe
commit 95c49fdf79
10 changed files with 314 additions and 299 deletions

View File

@@ -78,10 +78,17 @@ test_that("mo_property works", {
expect_identical(suppressWarnings(mo_ref("Chlamydia psittaci")), "Page, 1968")
expect_identical(mo_ref("Chlamydophila psittaci"), "Everett et al., 1999")
# check vector with random values
#library(dplyr)
#df_sample <- AMR::microorganisms %>% sample_n(100)
#expect_identical(df_sample %>% pull(mo) %>% mo_fullname(language = "en"),
# df_sample %>% pull(fullname))
# outcome of mo_fullname must always return the fullname from the data set
library(dplyr)
a <- microorganisms %>%
transmute(mo,
# fullname from the original data:
f1 = fullname,
# newly created fullname based on MO code:
f2 = mo_fullname(mo, language = "en")) %>%
filter(f1 != f2)
expect_equal(nrow(a), 0)
})