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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.1.9026</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.1.9027</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,43 +178,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.001 1 0.25 128 0.01 0.025 0.025 16 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 128 64 16 <=0.001 0.01 0.0625 0.0625 0.5 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 8 128 32 0.025 0.0625 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.01 <=0.001 0.0625 0.002 0.002 2 32 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.001 0.002 0.125 16 8 <=0.001 0.002 >=64 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 8 0.005 0.005 0.25 0.125 2 <=0.001</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 30 11 11 41 49 41 47 7 44 29 15 18 25 6 30 49 24 38 15 23 15 17 43 45 6</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 38 46 47 12 49 31 7 28 47 28 22 49 26 50 7 18 48 32 35 20 41 47 49 32</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <rsi></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I I S R R I I S R S I S R R R R I S I R I I S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R S I I S R R R I R S S I R R S R I R S R R S S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.025 8 2 1 0.002 0.125 2 64 0.25 16 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.005 0.125 0.01 256 0.5 1 4 0.25 0.125 0.001 256 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 4 1 64 0.125 8 1 32 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.002 32 2 0.0625 2 0.125 <=0.001 0.25 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 128 32 0.005 8 16 64 0.025 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 >=64 2 4 8 0.5 >=64 2 1 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] >=64 16 8 <=0.25 <=0.25 4 <=0.25 16 16 <=0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 16 32 32 <=0.25 <=0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 1 8 1 >=32 >=32 <=0.5 2 16 2 4 <=0.5</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 16 4 >=32 16 4 8 8 4 >=32 2 16 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 1 >=8 <=0.125 0.25 4 0.5 >=8 >=8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.25 0.25 1 4 <=0.125 1 >=8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 4 0.5 2 >=8 >=8 >=8 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=16 >=16 >=16 0.5 4 1 1 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.125 1 8 <=0.125 0.25 >=16 4 0.25 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 4 2 0.25 8 2 2 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 46 14 40 42 13 26 42 12 21 41 26 21 12 24 27 40 21 45 37 24 13 41 17 41</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 50 11 47 9 25 21 25 20 11 21 22 48 23 24 37 32 17 9 48 36 20 26 29 31 19</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 16 17 11 13 14 13 17 17 16 17 12 17 11 16 11 13 15 13 11 16 12 14 16 13</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 13 11 11 11 12 15 16 11 14 11 16 15 17 12 11 15 15 13 17 16 15 14 13 17</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 17 19 18 25 20 18 23 18 15 23 20 24 23 21 20 18 21 18 21 23 15 18 25 22</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 15 21 21 27 25 24 26 20 22 26 15 24 23 26 24 18 23 18 23 25 24 23 19 15</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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