mirror of
https://github.com/msberends/AMR.git
synced 2025-07-12 19:41:58 +02:00
Built site for AMR: 2.0.0.9026@2d97cca
This commit is contained in:
github-actions
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9025</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9026</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -210,42 +210,42 @@
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 256 256 0.0625 64 0.5 0.25 <=0.002 0.025 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 0.0625 32 0.5 0.01 32 0.005 0.0625 <=0.002</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 0.025 4 16 128 1 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 128 1 0.01 0.002 0.01 4 8 0.01 0.002 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 8 0.5 2 0.0625 8 2 128 4 0.5 0.125 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 0.005 0.005 0.125 4 0.001 </span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 30 46 46 42 24 26 25 45 42 43 21 40 13 48 44 6 50 31 27 11 9 20 46 11 47</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 16 34 40 10 14 49 42 17 17 16 44 22 9 24 40 25 8 47 47 38 17 42 41 41 32</span>
|
||||
<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] R I R I S I S R I I R R S S R S R R I S S I I S S</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] S R I I S I S I S R I S I I S I I R S R R S R R R</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 8 0.025 4 8 0.002 0.01 0.5 1 128 8 0.01 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] 0.025 >=256 >=256 0.125 >=256 8 16 0.01 64 32 16 0.001</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.025 4 0.005 0.01 1 32 32 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 0.25 32 2 0.5 0.002 0.5 2 0.01 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 32 64 <=0.001 0.01 2 8 0.025 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 16 1 0.5 8 8 1 1 8 2 8 2 0.5 16 0.5 16 4 4 0.5</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [20] 4 8 8 8 1 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 >=16 0.25 0.5 0.25 4 2 8 1 8 2 0.5 1 8 0.25</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [16] 1 >=16 0.5 0.5 1 8 0.5 >=16 4 4 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 <=0.125 2 0.5 0.25 2 0.25 0.5 <=0.125</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] <=0.125 1 1 4 1 <=0.125 0.25 4 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 4 <=0.125 4 <=0.125 1 1 <=0.125</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.5 <=0.125 <=0.125 <=0.125 0.25 0.25 <=0.125 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 1 1 2 2 4 <=0.125 2 <=0.125 0.25 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 2 0.5 2 2 <=0.125 0.5 0.5 </span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 25 10 45 47 8 43 46 45 43 28 9 46 19 15 46 13 50 35 44 46 25 9 11 50 33</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 32 41 32 19 38 41 38 37 32 49 38 33 50 44 14 10 47 32 18 29 13 42 22 24 48</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 16 13 17 14 12 13 14 13 11 14 17 12 12 17 16 16 13 12 12 11 14 13 17 15 17</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 13 14 13 16 12 16 16 12 14 15 17 13 14 12 16 12 11 14 17 16 17 13 11 13 14</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 20 18 19 21 20 22 19 17 23 23 15 24 24 25 21 15 19 19 27 27 25 19 16 22 16</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 17 18 24 27 26 24 15 19 17 19 21 15 27 22 26 23 15 25 22 21 17 24 24 15 17</span>
|
||||
<span class="r-in"><span><span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
||||
Reference in New Issue
Block a user