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EUCAST rules for MDRO

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dr. M.S. (Matthijs) Berends
2018-04-25 15:33:58 +02:00
parent 0b22ddef8e
commit 970e3ed7f1
19 changed files with 694 additions and 173 deletions
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8
tests/testthat/test-mdro.R
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@ -3,13 +3,17 @@ context("mdro.R")
test_that("MDRO works", {
library(dplyr)
outcome <- MDRO(septic_patients, "nl", info = FALSE)
outcome <- MDRO(septic_patients, "EUCAST", info = FALSE)
# check class
expect_equal(outcome %>% class(), c('ordered', 'factor'))
outcome <- MDRO(septic_patients, "nl", info = FALSE)
# check class
expect_equal(outcome %>% class(), c('ordered', 'factor'))
# septic_patients should have these finding using Dutch guidelines
expect_equal(outcome %>% freq(toConsole = FALSE) %>% pull(Count), c(1152, 824, 3, 21))
expect_equal(outcome %>% freq(toConsole = FALSE) %>% pull(Count), c(3, 21))
expect_equal(BRMO(septic_patients, info = FALSE), MDRO(septic_patients, "nl", info = FALSE))