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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.1.9047</small>
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@ -178,43 +178,42 @@
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 256 1 0.001 128 0.001 64 256 0.001 0.002 16 128 256 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] 0.001 64 8 0.025 2 0.002 128 64 128 0.001 0.01 0.25 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] 0.025</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 2 64 16 &gt;=256 64 128 &lt;=0.001 0.5 8 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [10] 16 2 8 8 2 &gt;=256 32 64 0.5 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] &gt;=256 16 0.5 0.0625 64 0.01 0.125 </span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 6 22 25 8 47 50 15 46 23 33 41 11 48 17 36 28 15 6 11 44 34 19 9 48 29</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 41 20 7 37 10 50 20 23 38 32 44 6 34 26 19 46 43 11 32 50 18 12 32 19 37</span>
<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;rsi&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] I R R R R R I R I R S R S S S I S S S S I R I I S</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] S R R R I S I S I R I I S S R R R I R R R I S R R</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.025 32 0.125 32 0.0625 0.25 0.125 0.002 0.125 0.25 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 0.0625 2 2 0.01 0.5 0.001 0.025 0.25 4 0.01 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 0.0625 0.002 32 8 &gt;=64 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 8 32 8 0.005 4 8 0.025 &gt;=64 0.5 0.001 0.025 0.001</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [13] 0.125 &gt;=64 0.125 0.002 0.01 16 &gt;=64 8 &gt;=64 0.5 0.125 32 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] 4 </span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 2 32 8 &lt;=1 16 8 4 32 32 8 &lt;=1 16 8 &lt;=1 4 8 &lt;=1 8 16 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [20] 16 2 4 8 32 16 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 16 4 8 4 16 8 16 &lt;=1 4 2 4 4 4 2 8 4 &lt;=1 16 16 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [20] 2 &lt;=1 &lt;=1 4 16 4 </span>
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;mic&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] &lt;=0.0625 1 0.5 0.125 &lt;=0.0625 0.5 4 0.5 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] 4 0.25 2 2 &lt;=0.0625 0.25 0.125 &lt;=0.0625</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [17] 1 1 &gt;=8 2 0.125 4 &lt;=0.0625 2 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] 1 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 0.5 0.125 0.25 0.125 0.125 0.125 4 2 0.0625 0.125 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [11] 0.0625 2 0.5 1 1 2 2 4 1 0.125 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] 2 2 1 0.25 0.5 </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 27 46 48 46 45 11 8 45 45 13 31 50 41 43 24 16 32 41 42 42 42 46 41 26 26</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 26 40 17 35 19 24 48 16 44 33 47 16 49 50 37 40 41 22 29 46 47 38 22 49 30</span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 12 15 14 15 17 12 14 15 11 11 16 15 16 17 13 16 11 17 14 15 16 15 12 16 17</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 16 13 14 15 14 16 17 16 14 11 16 17 12 14 14 12 11 17 13 12 12 11 14 14 15</span>
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Class &lt;disk&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 27 16 15 19 18 15 24 26 25 18 22 17 20 26 19 18 23 26 16 24 19 22 21 20 20</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 23 23 21 23 20 23 18 20 18 27 25 17 16 26 22 20 17 20 19 23 20 24 24 18 25</span>
<span class="r-in"><span><span class="co"># }</span></span></span>
</code></pre></div>
</div>