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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9143</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9144</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,44 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.002 0.005 0.125 >=256 16 32 >=256 0.025 0.125 >=256 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] >=256 >=256 >=256 0.025 16 1 0.125 128 8 0.001 128 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 0.005 32 32 0.002 0.25 64 32 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 128 <=0.001 <=0.001 <=0.001 0.25 0.005 >=256 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 64 8 >=256 0.025 4 0.125 128 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 42 10 37 12 22 29 28 11 50 44 39 14 41 6 16 47 46 43 38 24 15 42 45 38</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 50 37 42 49 34 38 41 43 38 18 20 50 28 38 29 41 41 11 17 11 43 30 36 11 14</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R I S I I R I R R I R I I I S I I R I I S R R I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R R R S R R I I R I I R S S S S S S S I R R I I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 1 64 8 0.025 0.001 0.001 2 0.5 16 0.005 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.125 1 32 0.25 0.125 0.002 2 0.5 4 0.125 0.01 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.0625 >=128 <=0.001 64 0.025 >=128 0.002 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 0.25 0.0625 64 16 4 0.025 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] >=128 16 0.5 >=128 2 16 64 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 1 >=16 4 >=16 1 <=0.5 2 >=16 <=0.5 <=0.5 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 8 4 8 >=16 2 <=0.5 <=0.5 1 >=16 2 1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=1 2 2 >=32 <=1 8 2 16 16 <=1 8 <=1 <=1 16 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 8 8 >=32 4 <=1 <=1 8 <=1 <=1 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 8 0.5 0.25 4 >=16 8 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] <=0.0625 0.125 1 8 >=16 >=16 >=16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 4 0.5 <=0.0625 0.5 2 2 0.125 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.025 1 0.0625 0.25 0.5 2 16 16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 8 0.25 1 1 8 4 0.0625 0.025 16 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 0.25 0.5 0.5 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 30 23 42 49 27 45 39 9 28 12 43 30 29 49 45 25 13 46 41 47 10 26 37 14 27</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 47 32 16 38 25 17 14 11 15 35 50 49 36 35 31 46 24 45 13 15 10 36 17 50</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 14 16 14 14 14 17 13 15 17 13 13 15 11 13 14 13 14 12 13 11 12 15 14 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 14 17 11 11 13 12 11 12 14 13 15 15 14 15 17 11 14 12 13 12 14 12 14 14</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 20 21 17 20 27 17 24 17 25 27 18 27 25 16 21 25 20 19 27 15 17 20 24 20</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 25 25 25 17 27 23 17 19 15 23 21 25 23 20 18 19 18 26 18 16 21 17 22 26</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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