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mirror of https://github.com/msberends/AMR.git synced 2026-06-24 08:56:21 +02:00

(v3.0.1.9059) Fix WISCA in vignette

This commit is contained in:
2026-06-23 14:38:59 +02:00
parent 3f9f931777
commit 9898b5df4b
41 changed files with 1310 additions and 757 deletions

View File

@@ -14,11 +14,17 @@
\alias{count_df}
\title{Count Available Isolates}
\usage{
count_resistant(..., only_all_tested = FALSE,
guideline = getOption("AMR_guideline", "EUCAST"))
count_resistant(
...,
only_all_tested = FALSE,
guideline = getOption("AMR_guideline", "EUCAST")
)
count_susceptible(..., only_all_tested = FALSE,
guideline = getOption("AMR_guideline", "EUCAST"))
count_susceptible(
...,
only_all_tested = FALSE,
guideline = getOption("AMR_guideline", "EUCAST")
)
count_S(..., only_all_tested = FALSE)
@@ -34,8 +40,12 @@ count_all(..., only_all_tested = FALSE)
n_sir(..., only_all_tested = FALSE)
count_df(data, translate_ab = "name", language = get_AMR_locale(),
combine_SI = TRUE)
count_df(
data,
translate_ab = "name",
language = get_AMR_locale(),
combine_SI = TRUE
)
}
\arguments{
\item{...}{One or more vectors (or columns) with antibiotic interpretations. They will be transformed internally with \code{\link[=as.sir]{as.sir()}} if needed.}