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mirror of https://github.com/msberends/AMR.git synced 2026-06-24 12:16:22 +02:00

(v3.0.1.9059) Fix WISCA in vignette

This commit is contained in:
2026-06-23 14:38:59 +02:00
parent 3f9f931777
commit 9898b5df4b
41 changed files with 1310 additions and 757 deletions

View File

@@ -17,13 +17,30 @@ As per their GPL-2 licence that demands documentation of code changes, the chang
}
}
\usage{
ggplot_pca(x, choices = 1:2, scale = 1, pc.biplot = TRUE,
labels = NULL, labels_textsize = 3, labels_text_placement = 1.5,
groups = NULL, ellipse = TRUE, ellipse_prob = 0.68,
ellipse_size = 0.5, ellipse_alpha = 0.5, points_size = 2,
points_alpha = 0.25, arrows = TRUE, arrows_colour = "darkblue",
arrows_size = 0.5, arrows_textsize = 3, arrows_textangled = TRUE,
arrows_alpha = 0.75, base_textsize = 10, ...)
ggplot_pca(
x,
choices = 1:2,
scale = 1,
pc.biplot = TRUE,
labels = NULL,
labels_textsize = 3,
labels_text_placement = 1.5,
groups = NULL,
ellipse = TRUE,
ellipse_prob = 0.68,
ellipse_size = 0.5,
ellipse_alpha = 0.5,
points_size = 2,
points_alpha = 0.25,
arrows = TRUE,
arrows_colour = "darkblue",
arrows_size = 0.5,
arrows_textsize = 3,
arrows_textangled = TRUE,
arrows_alpha = 0.75,
base_textsize = 10,
...
)
}
\arguments{
\item{x}{An object returned by \code{\link[=pca]{pca()}}, \code{\link[=prcomp]{prcomp()}} or \code{\link[=princomp]{princomp()}}.}
@@ -42,9 +59,8 @@ ggplot_pca(x, choices = 1:2, scale = 1, pc.biplot = TRUE,
}
\item{pc.biplot}{
If true, use what {\if{html}{\cite{}\out{<a href="#reference+biplot.princomp.Rd+R+3AGabriel+3A1971" class="citation">}}Gabriel (1971)\if{html}{\out{</a>}}} refers to as a
\dQuote{principal component biplot},
with \code{lambda = 1} and observations scaled up by sqrt(n) and
If true, use what Gabriel (1971) refers to as a "principal component
biplot", with \code{lambda = 1} and observations scaled up by sqrt(n) and
variables scaled down by sqrt(n). Then inner products between
variables approximate covariances and distances between observations
approximate Mahalanobis distance.