P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-06-24 12:16:22 +02:00
Code Releases Activity

(v3.0.1.9059) Fix WISCA in vignette

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2026-06-23 14:38:59 +02:00
parent 3f9f931777
commit 9898b5df4b
41 changed files with 1310 additions and 757 deletions
Download Patch File Download Diff File Expand all files Collapse all files

46
man/ggplot_sir.Rd
View File

@@ -5,18 +5,42 @@
\alias{geom_sir}
\title{AMR Plots with \code{ggplot2}}
\usage{
ggplot_sir(data, position = NULL, x = "antibiotic",
fill = "interpretation", facet = NULL, breaks = seq(0, 1, 0.1),
limits = NULL, translate_ab = "name", combine_SI = TRUE,
minimum = 30, language = get_AMR_locale(), nrow = NULL, colours = c(S
= "#3CAEA3", SDD = "#8FD6C4", SI = "#3CAEA3", I = "#F6D55C", IR = "#ED553B",
R = "#ED553B"), datalabels = TRUE, datalabels.size = 2.5,
datalabels.colour = "grey15", title = NULL, subtitle = NULL,
caption = NULL, x.title = "Antimicrobial", y.title = "Proportion", ...)
ggplot_sir(
data,
position = NULL,
x = "antibiotic",
fill = "interpretation",
facet = NULL,
breaks = seq(0, 1, 0.1),
limits = NULL,
translate_ab = "name",
combine_SI = TRUE,
minimum = 30,
language = get_AMR_locale(),
nrow = NULL,
colours = c(S = "#3CAEA3", SDD = "#8FD6C4", SI = "#3CAEA3", I = "#F6D55C", IR =
"#ED553B", R = "#ED553B"),
datalabels = TRUE,
datalabels.size = 2.5,
datalabels.colour = "grey15",
title = NULL,
subtitle = NULL,
caption = NULL,
x.title = "Antimicrobial",
y.title = "Proportion",
...
)
geom_sir(position = NULL, x = c("antibiotic", "interpretation"),
fill = "interpretation", translate_ab = "name", minimum = 30,
language = get_AMR_locale(), combine_SI = TRUE, ...)
geom_sir(
position = NULL,
x = c("antibiotic", "interpretation"),
fill = "interpretation",
translate_ab = "name",
minimum = 30,
language = get_AMR_locale(),
combine_SI = TRUE,
...
)
}
\arguments{
\item{data}{A \link{data.frame} with column(s) of class \code{\link{sir}} (see \code{\link[=as.sir]{as.sir()}}).}