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Replace RSI with SIR

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This commit is contained in:
Dr. Matthijs Berends
2023-01-21 23:47:20 +01:00
committed by GitHub
parent 24b12024ce
commit 98e62c9af2
127 changed files with 1746 additions and 1648 deletions
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4
R/ab_property.R
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@ -116,7 +116,7 @@
#' head()
#'
#' example_isolates %>%
#' set_ab_names(where(is.rsi)) %>%
#' set_ab_names(where(is.sir)) %>%
#' colnames()
#'
#' example_isolates %>%
@ -372,7 +372,7 @@ set_ab_names <- function(data, ..., property = "name", language = get_AMR_locale
} else {
df <- data
}
vars <- get_column_abx(df, info = FALSE, only_rsi_columns = FALSE, sort = FALSE, fn = "set_ab_names")
vars <- get_column_abx(df, info = FALSE, only_sir_columns = FALSE, sort = FALSE, fn = "set_ab_names")
if (length(vars) == 0) {
message_("No columns with antibiotic results found for `set_ab_names()`, leaving names unchanged.")
return(data)