mirror of
https://github.com/msberends/AMR.git
synced 2025-07-11 21:01:54 +02:00
Replace RSI with SIR
This commit is contained in:
committed by
GitHub
parent
24b12024ce
commit
98e62c9af2
52
R/sir_df.R
Executable file
52
R/sir_df.R
Executable file
@ -0,0 +1,52 @@
|
||||
# ==================================================================== #
|
||||
# TITLE #
|
||||
# AMR: An R Package for Working with Antimicrobial Resistance Data #
|
||||
# #
|
||||
# SOURCE #
|
||||
# https://github.com/msberends/AMR #
|
||||
# #
|
||||
# CITE AS #
|
||||
# Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C #
|
||||
# (2022). AMR: An R Package for Working with Antimicrobial Resistance #
|
||||
# Data. Journal of Statistical Software, 104(3), 1-31. #
|
||||
# doi:10.18637/jss.v104.i03 #
|
||||
# #
|
||||
# Developed at the University of Groningen and the University Medical #
|
||||
# Center Groningen in The Netherlands, in collaboration with many #
|
||||
# colleagues from around the world, see our website. #
|
||||
# #
|
||||
# This R package is free software; you can freely use and distribute #
|
||||
# it for both personal and commercial purposes under the terms of the #
|
||||
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
||||
# the Free Software Foundation. #
|
||||
# We created this package for both routine data analysis and academic #
|
||||
# research and it was publicly released in the hope that it will be #
|
||||
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
|
||||
# #
|
||||
# Visit our website for the full manual and a complete tutorial about #
|
||||
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
|
||||
# ==================================================================== #
|
||||
|
||||
#' @rdname proportion
|
||||
#' @export
|
||||
sir_df <- function(data,
|
||||
translate_ab = "name",
|
||||
language = get_AMR_locale(),
|
||||
minimum = 30,
|
||||
as_percent = FALSE,
|
||||
combine_SI = TRUE,
|
||||
confidence_level = 0.95) {
|
||||
tryCatch(
|
||||
sir_calc_df(
|
||||
type = "both",
|
||||
data = data,
|
||||
translate_ab = translate_ab,
|
||||
language = language,
|
||||
minimum = minimum,
|
||||
as_percent = as_percent,
|
||||
combine_SI = combine_SI,
|
||||
confidence_level = confidence_level
|
||||
),
|
||||
error = function(e) stop_(gsub("in sir_calc_df(): ", "", e$message, fixed = TRUE), call = -5)
|
||||
)
|
||||
}
|
Reference in New Issue
Block a user