P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-12 21:41:55 +02:00
Code Releases Activity

Replace RSI with SIR

Browse Source
This commit is contained in:
Dr. Matthijs Berends
2023-01-21 23:47:20 +01:00
committed by GitHub
parent 24b12024ce
commit 98e62c9af2
127 changed files with 1746 additions and 1648 deletions
Download Patch File Download Diff File Expand all files Collapse all files

10
inst/tinytest/test-mean_amr_distance.R
View File

@ -29,7 +29,7 @@
vctr_disk <- as.disk(c(20:25))
vctr_mic <- as.mic(2^c(0:5))
vctr_rsi <- as.rsi(c("S", "S", "I", "I", "R", "R"))
vctr_sir <- as.sir(c("S", "S", "I", "I", "R", "R"))
expect_identical(
mean_amr_distance(vctr_disk),
@ -42,22 +42,22 @@ expect_identical(
)
expect_identical(
mean_amr_distance(vctr_rsi, combine_SI = FALSE),
mean_amr_distance(vctr_sir, combine_SI = FALSE),
(c(1, 1, 2, 2, 3, 3) - mean(c(1, 1, 2, 2, 3, 3))) / sd(c(1, 1, 2, 2, 3, 3))
)
expect_identical(
mean_amr_distance(vctr_rsi, combine_SI = TRUE),
mean_amr_distance(vctr_sir, combine_SI = TRUE),
(c(1, 1, 1, 1, 3, 3) - mean(c(1, 1, 1, 1, 3, 3))) / sd(c(1, 1, 1, 1, 3, 3))
)
expect_equal(
mean_amr_distance(data.frame(AMX = vctr_mic, GEN = vctr_rsi, TOB = vctr_disk)),
mean_amr_distance(data.frame(AMX = vctr_mic, GEN = vctr_sir, TOB = vctr_disk)),
c(-1.10603655, -0.74968823, -0.39333990, -0.03699158, 0.96485397, 1.32120229),
tolerance = 0.00001
)
expect_equal(
mean_amr_distance(data.frame(AMX = vctr_mic, GEN = vctr_rsi, TOB = vctr_disk), 2:3),
mean_amr_distance(data.frame(AMX = vctr_mic, GEN = vctr_sir, TOB = vctr_disk), 2:3),
c(-0.9909017, -0.7236405, -0.4563792, -0.1891180, 1.0463891, 1.3136503),
tolerance = 0.00001
)