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Replace RSI with SIR

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Dr. Matthijs Berends
2023-01-21 23:47:20 +01:00
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parent 24b12024ce
commit 98e62c9af2
127 changed files with 1746 additions and 1648 deletions
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man/WHONET.Rd
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@ -32,7 +32,7 @@ A \link[tibble:tibble]{tibble} with 500 observations and 53 variables:
\item \verb{Inducible clindamycin resistance}\cr Clindamycin can be induced?
\item \code{Comment}\cr Other comments
\item \verb{Date of data entry}\cr \link{Date} this data was entered in WHONET
\item \code{AMP_ND10:CIP_EE}\cr 28 different antibiotics. You can lookup the abbreviations in the \link{antibiotics} data set, or use e.g. \code{\link[=ab_name]{ab_name("AMP")}} to get the official name immediately. Before analysis, you should transform this to a valid antibiotic class, using \code{\link[=as.rsi]{as.rsi()}}.
\item \code{AMP_ND10:CIP_EE}\cr 0 different antibiotics. You can lookup the abbreviations in the \link{antibiotics} data set, or use e.g. \code{\link[=ab_name]{ab_name("AMP")}} to get the official name immediately. Before analysis, you should transform this to a valid antibiotic class, using \code{\link[=as.sir]{as.sir()}}.
}
}
\usage{