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Replace RSI with SIR

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This commit is contained in:
Dr. Matthijs Berends
2023-01-21 23:47:20 +01:00
committed by GitHub
parent 24b12024ce
commit 98e62c9af2
127 changed files with 1746 additions and 1648 deletions
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10
man/as.disk.Rd
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@@ -29,7 +29,7 @@ An \link{integer} with additional class \code{\link{disk}}
This transforms a vector to a new class \code{\link{disk}}, which is a disk diffusion growth zone size (around an antibiotic disk) in millimetres between 6 and 50.
}
\details{
Interpret disk values as RSI values with \code{\link[=as.rsi]{as.rsi()}}. It supports guidelines from EUCAST and CLSI.
Interpret disk values as SIR values with \code{\link[=as.sir]{as.sir()}}. It supports guidelines from EUCAST and CLSI.
Disk diffusion growth zone sizes must be between 6 and 50 millimetres. Values higher than 50 but lower than 100 will be maximised to 50. All others input values outside the 6-50 range will return \code{NA}.
@@ -54,8 +54,8 @@ if (require("dplyr")) {
}
}
# interpret disk values, see ?as.rsi
as.rsi(
# interpret disk values, see ?as.sir
as.sir(
x = as.disk(18),
mo = "Strep pneu", # `mo` will be coerced with as.mo()
ab = "ampicillin", # and `ab` with as.ab()
@@ -63,9 +63,9 @@ as.rsi(
)
# interpret whole data set, pretend to be all from urinary tract infections:
as.rsi(df, uti = TRUE)
as.sir(df, uti = TRUE)
}
\seealso{
\code{\link[=as.rsi]{as.rsi()}}
\code{\link[=as.sir]{as.sir()}}
}
\keyword{datasets}