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Replace RSI with SIR

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Dr. Matthijs Berends
2023-01-21 23:47:20 +01:00
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parent 24b12024ce
commit 98e62c9af2
127 changed files with 1746 additions and 1648 deletions
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man/example_isolates.Rd
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@ -13,7 +13,7 @@ A \link[tibble:tibble]{tibble} with 2,000 observations and 46 variables:
\item \code{gender}\cr Gender of the patient, either "F" or "M"
\item \code{ward}\cr Ward type where the patient was admitted, either "Clinical", "ICU" or "Outpatient"
\item \code{mo}\cr ID of microorganism created with \code{\link[=as.mo]{as.mo()}}, see also the \link{microorganisms} data set
\item \code{PEN:RIF}\cr 40 different antibiotics with class \code{\link{rsi}} (see \code{\link[=as.rsi]{as.rsi()}}); these column names occur in the \link{antibiotics} data set and can be translated with \code{\link[=set_ab_names]{set_ab_names()}} or \code{\link[=ab_name]{ab_name()}}
\item \code{PEN:RIF}\cr 40 different antibiotics with class \code{\link{sir}} (see \code{\link[=as.sir]{as.sir()}}); these column names occur in the \link{antibiotics} data set and can be translated with \code{\link[=set_ab_names]{set_ab_names()}} or \code{\link[=ab_name]{ab_name()}}
}
}
\usage{