P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-13 02:32:07 +02:00
Code Releases Activity

Replace RSI with SIR

Browse Source
This commit is contained in:
Dr. Matthijs Berends
2023-01-21 23:47:20 +01:00
committed by GitHub
parent 24b12024ce
commit 98e62c9af2
127 changed files with 1746 additions and 1648 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
man/ggplot_pca.Rd
View File

@ -121,7 +121,7 @@ if (require("dplyr")) {
genus = mo_genus(mo)
) \%>\% # and genus as we do here;
filter(n() >= 30) \%>\% # filter on only 30 results per group
summarise_if(is.rsi, resistance) # then get resistance of all drugs
summarise_if(is.sir, resistance) # then get resistance of all drugs
# now conduct PCA for certain antimicrobial drugs
pca_result <- resistance_data \%>\%