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Replace RSI with SIR

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This commit is contained in:
Dr. Matthijs Berends
2023-01-21 23:47:20 +01:00
committed by GitHub
parent 24b12024ce
commit 98e62c9af2
127 changed files with 1746 additions and 1648 deletions
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6
man/key_antimicrobials.Rd
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@ -17,11 +17,11 @@ key_antimicrobials(
"oxacillin", "rifampin"),
antifungal = c("anidulafungin", "caspofungin", "fluconazole", "miconazole", "nystatin",
"voriconazole"),
only_rsi_columns = FALSE,
only_sir_columns = FALSE,
...
)
all_antimicrobials(x = NULL, only_rsi_columns = FALSE, ...)
all_antimicrobials(x = NULL, only_sir_columns = FALSE, ...)
antimicrobials_equal(
y,
@ -45,7 +45,7 @@ antimicrobials_equal(
\item{antifungal}{names of antifungal drugs for \strong{fungi}, case-insensitive. Set to \code{NULL} to ignore. See \emph{Details} for the default antifungal drugs}
\item{only_rsi_columns}{a \link{logical} to indicate whether only columns must be included that were transformed to class \code{rsi} (see \code{\link[=as.rsi]{as.rsi()}}) on beforehand (defaults to \code{FALSE})}
\item{only_sir_columns}{a \link{logical} to indicate whether only columns must be included that were transformed to class \code{sir} (see \code{\link[=as.sir]{as.sir()}}) on beforehand (defaults to \code{FALSE})}
\item{...}{ignored, only in place to allow future extensions}