P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-12 02:22:08 +02:00
Code Releases Activity

Replace RSI with SIR

Browse Source
This commit is contained in:
Dr. Matthijs Berends
2023-01-21 23:47:20 +01:00
committed by GitHub
parent 24b12024ce
commit 98e62c9af2
127 changed files with 1746 additions and 1648 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
vignettes/PCA.Rmd
View File

@ -44,7 +44,7 @@ resistance_data <- example_isolates %>%
order = mo_order(mo), # group on anything, like order
genus = mo_genus(mo)
) %>% # and genus as we do here
summarise_if(is.rsi, resistance) %>% # then get resistance of all drugs
summarise_if(is.sir, resistance) %>% # then get resistance of all drugs
select(
order, genus, AMC, CXM, CTX,
CAZ, GEN, TOB, TMP, SXT