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fix for keyab, more examples

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-07-23 10:35:39 +02:00
parent ad662d7bab
commit 9920ac8a5c
6 changed files with 50 additions and 18 deletions
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8
tests/testthat/test-first_isolates.R
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@ -1,13 +1,5 @@
context("first_isolates.R")
test_that("keyantibiotics work", {
expect_equal(length(key_antibiotics(septic_patients, info = FALSE)), nrow(septic_patients))
expect_true(key_antibiotics_equal("SSS", "SSS"))
expect_false(key_antibiotics_equal("SSS", "SRS"))
expect_true(key_antibiotics_equal("SSS", "SIS", ignore_I = TRUE))
expect_false(key_antibiotics_equal("SSS", "SIS", ignore_I = FALSE))
})
test_that("first isolates work", {
# septic_patients contains 1959 out of 2000 first isolates
expect_equal(

11
tests/testthat/test-key_antibiotics.R Normal file
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@ -0,0 +1,11 @@
context("key_antibiotics.R")
test_that("keyantibiotics work", {
expect_equal(length(key_antibiotics(septic_patients, warnings = FALSE)), nrow(septic_patients))
expect_true(key_antibiotics_equal("SSS", "SSS"))
expect_false(key_antibiotics_equal("SSS", "SRS"))
expect_true(key_antibiotics_equal("SSS", "SIS", ignore_I = TRUE))
expect_false(key_antibiotics_equal("SSS", "SIS", ignore_I = FALSE))
expect_true(key_antibiotics_equal(".SS", "SI.", ignore_I = TRUE))
expect_false(key_antibiotics_equal(".SS", "SI.", ignore_I = FALSE))
})