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Built site for AMR@3.0.1.9067: 935071a

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2026-06-24 17:55:11 +00:00
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commit 99f55f2ec2
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reference/add_custom_microorganisms.html
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@@ -7,7 +7,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.1.9065</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.1.9067</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -132,12 +132,6 @@
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "Gram-negative"</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu"><a href="mo_property.html">mo_info</a></span><span class="op">(</span><span class="st">"Enterobacter asburiae/cloacae"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> Since <span style="color: #0000BB;">AMR v3.1.0</span>, `mo_kingdom()` returns the taxonomic kingdom as defined by</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Göker and Oren (2024), who formally introduced a new kingdom rank into</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> prokaryotic nomenclature (DOI: 10.1099/ijsem.0.006242</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> (<span style="color: #0000BB; font-style: italic;">&lt;https://doi.org/10.1099/ijsem.0.006242&gt;</span>)). <span style="font-weight: bold;">The former kingdom of Bacteria</span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> was divided into four new kingdoms under the <span style="font-weight: bold;">new domain of Bacteria</span>. For the</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> old behaviour, use `mo_domain()`. This note will be shown once per session.</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $mo</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "CUSTOM1_ENTRB_ASB/"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>