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2026-06-24 17:55:11 +00:00
parent c89dafb556
commit 99f55f2ec2
90 changed files with 207 additions and 155 deletions
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reference/mo_property.md
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@@ -564,6 +564,8 @@ Data set
``` r
# taxonomic tree -----------------------------------------------------------
mo_domain("Klebsiella pneumoniae")
#> [1] "Bacteria"
mo_kingdom("Klebsiella pneumoniae")
#> [1] "Pseudomonadati"
mo_phylum("Klebsiella pneumoniae")
@@ -581,6 +583,35 @@ mo_species("Klebsiella pneumoniae")
mo_subspecies("Klebsiella pneumoniae")
#> [1] ""
# all in one go
mo_taxonomy("Klebsiella pneumoniae")
#> $domain
#> [1] "Bacteria"
#>
#> $kingdom
#> [1] "Pseudomonadati"
#>
#> $phylum
#> [1] "Pseudomonadota"
#>
#> $class
#> [1] "Gammaproteobacteria"
#>
#> $order
#> [1] "Enterobacterales"
#>
#> $family
#> [1] "Enterobacteriaceae"
#>
#> $genus
#> [1] "Klebsiella"
#>
#> $species
#> [1] "pneumoniae"
#>
#> $subspecies
#> [1] ""
#>
# full names and short names -----------------------------------------------
@@ -618,6 +649,8 @@ mo_url("Klebsiella pneumoniae")
mo_is_yeast(c("Candida", "Trichophyton", "Klebsiella"))
#> [1] TRUE FALSE FALSE
mo_group_members("Streptococcus group A")
#> [1] "Streptococcus pyogenes"
mo_group_members(c(
"Streptococcus group A",
"Streptococcus group C",
@@ -708,6 +741,7 @@ mo_fullname("Staph epidermidis")
#> [1] "Staphylococcus epidermidis"
mo_fullname("Staph epidermidis", Becker = TRUE)
#> [1] "Coagulase-negative Staphylococcus (CoNS)"
mo_shortname("Staph epidermidis")
#> [1] "S. epidermidis"
mo_shortname("Staph epidermidis", Becker = TRUE)
@@ -720,6 +754,7 @@ mo_fullname("Strep agalactiae")
#> [1] "Streptococcus agalactiae"
mo_fullname("Strep agalactiae", Lancefield = TRUE)
#> [1] "Streptococcus Group B"
mo_shortname("Strep agalactiae")
#> [1] "S. agalactiae"
mo_shortname("Strep agalactiae", Lancefield = TRUE)
@@ -739,13 +774,13 @@ mo_gramstain("Klebsiella pneumoniae", language = "el") # Greek
mo_gramstain("Klebsiella pneumoniae", language = "uk") # Ukrainian
#> [1] "Грамнегативні"
# mo_type is equal to mo_kingdom, but mo_kingdom will remain untranslated
mo_kingdom("Klebsiella pneumoniae")
#> [1] "Pseudomonadati"
# mo_type is equal to mo_domain, but mo_domain will remain untranslated
mo_domain("Klebsiella pneumoniae")
#> [1] "Bacteria"
mo_type("Klebsiella pneumoniae")
#> [1] "Bacteria"
mo_kingdom("Klebsiella pneumoniae", language = "zh") # Chinese, no effect
#> [1] "Pseudomonadati"
mo_domain("Klebsiella pneumoniae", language = "zh") # Chinese, no effect
#> [1] "Bacteria"
mo_type("Klebsiella pneumoniae", language = "zh") # Chinese, translated
#> [1] "细菌"