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@@ -21,7 +21,7 @@ Use as.sir() to transform MICs or disks measurements to SIR values."><meta prope
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@@ -108,7 +108,10 @@ Use as.sir() to transform MICs or disks measurements to SIR values."><meta prope
<h3 id="imported-from-whonet">Imported From WHONET<a class="anchor" aria-label="anchor" href="#imported-from-whonet"></a></h3>
<p>Clinical breakpoints in this package were validated through and imported from <a href="https://whonet.org" class="external-link">WHONET</a>, a free desktop Windows application developed and supported by the WHO Collaborating Centre for Surveillance of Antimicrobial Resistance. More can be read on <a href="https://whonet.org" class="external-link">their website</a>. The developers of WHONET and this <code>AMR</code> package have been in contact about sharing their work. We highly appreciate their great development on the WHONET software.</p>
<p>Some breakpoints in this package were validated through and imported from <a href="https://whonet.org" class="external-link">WHONET</a>, a free desktop Windows application developed and supported by the WHO Collaborating Centre for Surveillance of Antimicrobial Resistance. More can be read on <a href="https://whonet.org" class="external-link">their website</a>. The developers of WHONET and this <code>AMR</code> package have been in contact about sharing their work. We highly appreciate their great development on the WHONET software.</p>
<p>From WHONET, imported were:</p><ul><li><p>All CLSI breakpoints, including ECOFF</p></li>
<li><p>EUCAST breakpoints between 2011 and 2018</p></li>
</ul><p>EUCAST breakpoints from 2019 onwards, were retrieved directly from <a href="https://www.eucast.org" class="external-link">https://www.eucast.org</a>.</p>
<p>Our import and reproduction script can be found here: <a href="https://github.com/msberends/AMR/blob/main/data-raw/_reproduction_scripts/reproduction_of_clinical_breakpoints.R" class="external-link">https://github.com/msberends/AMR/blob/main/data-raw/_reproduction_scripts/reproduction_of_clinical_breakpoints.R</a>.</p>
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