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reference/clinical_breakpoints.md
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@@ -100,7 +100,7 @@ to interpret raw data using a specific breakpoint type, e.g.
### Imported From WHONET
Clinical breakpoints in this package were validated through and imported
Some breakpoints in this package were validated through and imported
from [WHONET](https://whonet.org), a free desktop Windows application
developed and supported by the WHO Collaborating Centre for Surveillance
of Antimicrobial Resistance. More can be read on [their
@@ -108,6 +108,15 @@ website](https://whonet.org). The developers of WHONET and this `AMR`
package have been in contact about sharing their work. We highly
appreciate their great development on the WHONET software.
From WHONET, imported were:
- All CLSI breakpoints, including ECOFF
- EUCAST breakpoints between 2011 and 2018
EUCAST breakpoints from 2019 onwards, were retrieved directly from
<https://www.eucast.org>.
Our import and reproduction script can be found here:
<https://github.com/msberends/AMR/blob/main/data-raw/_reproduction_scripts/reproduction_of_clinical_breakpoints.R>.