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reference/intrinsic_resistant.md
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@@ -15,7 +15,7 @@ intrinsic_resistant
## Format
A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 294
079 observations and 2 variables:
079 observations and 3 variables:
- `mo`
Microorganism ID which occurs in
@@ -29,12 +29,15 @@ A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 294
Names can be retrieved using
[`ab_name()`](https://amr-for-r.org/reference/ab_property.md).
- `version`
Guideline name and version.
## Details
This data set is currently based on ['EUCAST Expected Resistant
This data set is currently strictly follows ['EUCAST Expected Resistant
Phenotypes'
v1.2](https://www.eucast.org/bacteria/important-additional-information/expert-rules/)
(2023).
(2023). The
This data set is internally used by:
@@ -68,18 +71,18 @@ repository](https://github.com/msberends/AMR/tree/main/data-raw/datasets).
``` r
intrinsic_resistant
#> # A tibble: 294,079 × 2
#> mo ab
#> <mo> <ab>
#> 1 B_GRAMP ATM
#> 2 B_GRAMP COL
#> 3 B_GRAMP NAL
#> 4 B_GRAMP PLB
#> 5 B_GRAMP TEM
#> 6 B_ANAER-POS ATM
#> 7 B_ANAER-POS COL
#> 8 B_ANAER-POS NAL
#> 9 B_ANAER-POS PLB
#> 10 B_ANAER-POS TEM
#> # A tibble: 294,079 × 3
#> mo ab version
#> <mo> <ab> <chr>
#> 1 B_GRAMP ATM 'EUCAST Expected Resistant Phenotypes' v1.2
#> 2 B_GRAMP COL 'EUCAST Expected Resistant Phenotypes' v1.2
#> 3 B_GRAMP NAL 'EUCAST Expected Resistant Phenotypes' v1.2
#> 4 B_GRAMP PLB 'EUCAST Expected Resistant Phenotypes' v1.2
#> 5 B_GRAMP TEM 'EUCAST Expected Resistant Phenotypes' v1.2
#> 6 B_ANAER-POS ATM 'EUCAST Expected Resistant Phenotypes' v1.2
#> 7 B_ANAER-POS COL 'EUCAST Expected Resistant Phenotypes' v1.2
#> 8 B_ANAER-POS NAL 'EUCAST Expected Resistant Phenotypes' v1.2
#> 9 B_ANAER-POS PLB 'EUCAST Expected Resistant Phenotypes' v1.2
#> 10 B_ANAER-POS TEM 'EUCAST Expected Resistant Phenotypes' v1.2
#> # ℹ 294,069 more rows
```