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(v1.7.1.9053) fortify() methods

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dr. M.S. (Matthijs) Berends
2021-11-01 13:51:13 +01:00
parent 91149d6d35
commit 9a2c431e16
25 changed files with 1046 additions and 965 deletions
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15
man/plot.Rd
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@ -4,10 +4,13 @@
\alias{plot}
\alias{plot.mic}
\alias{autoplot.mic}
\alias{fortify.mic}
\alias{plot.disk}
\alias{autoplot.disk}
\alias{fortify.disk}
\alias{plot.rsi}
\alias{autoplot.rsi}
\alias{fortify.rsi}
\title{Plotting for Classes \code{rsi}, \code{mic} and \code{disk}}
\usage{
\method{plot}{mic}(
@ -38,6 +41,8 @@
...
)
\method{fortify}{mic}(object, ...)
\method{plot}{disk}(
x,
main = paste("Disk zones of", deparse(substitute(x))),
@ -66,6 +71,8 @@
...
)
\method{fortify}{disk}(object, ...)
\method{plot}{rsi}(
x,
ylab = "Percentage",
@ -83,9 +90,11 @@
language = get_locale(),
...
)
\method{fortify}{rsi}(object, ...)
}
\arguments{
\item{x, object}{values created with \code{\link[=as.mic]{as.mic()}}, \code{\link[=as.disk]{as.disk()}} or \code{\link[=as.rsi]{as.rsi()}}}
\item{x, object}{values created with \code{\link[=as.mic]{as.mic()}}, \code{\link[=as.disk]{as.disk()}} or \code{\link[=as.rsi]{as.rsi()}} (or their \verb{random_*} variants, such as \code{\link[=random_mic]{random_mic()}})}
\item{mo}{any (vector of) text that can be coerced to a valid microorganism code with \code{\link[=as.mo]{as.mo()}}}
@ -103,10 +112,12 @@
\item{expand}{a \link{logical} to indicate whether the range on the x axis should be expanded between the lowest and highest value. For MIC values, intermediate values will be factors of 2 starting from the highest MIC value. For disk diameters, the whole diameter range will be filled.}
\item{...}{arguments passed on to \code{\link[=as.rsi]{as.rsi()}}}
\item{...}{arguments passed on to methods}
}
\value{
The \code{autoplot()} functions return a \code{\link[ggplot2:ggplot]{ggplot}} model that is extendible with any \code{ggplot2} function.
The \code{fortify()} functions return a \link{data.frame} as an extension for usage in the \code{\link[ggplot2:ggplot]{ggplot2::ggplot()}} function.
}
\description{
Functions to plot classes \code{rsi}, \code{mic} and \code{disk}, with support for base \R and \code{ggplot2}.