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(v0.9.0.9014) Machine reading guidelines

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dr. M.S. (Matthijs) Berends
2020-01-27 11:05:39 +01:00
parent 423d1d3c41
commit 9a3891efe4
21 changed files with 14042 additions and 36 deletions
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data-raw/whonet_bugfixes.R Normal file
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# WHONET fixes
microorganisms.codes[which(microorganisms.codes$code == "SAP"), "mo"] <- as.mo("staphylococcus")
microorganisms.codes[which(microorganisms.codes$code == "PAE"), "mo"] <- as.mo("pseudomonas aeruginosa")
microorganisms.codes[which(microorganisms.codes$code == "ANI"), "mo"] <- as.mo("aspergillus nidulans")
microorganisms.codes[which(microorganisms.codes$code == "CAL"), "mo"] <- as.mo("candida albicans")
microorganisms.codes[which(microorganisms.codes$code == "ENT"), "mo"] <- as.mo("enterococcus")
microorganisms.codes[which(microorganisms.codes$code == "STR"), "mo"] <- as.mo("streptococcus")
microorganisms.codes[which(microorganisms.codes$code == "CDF"), "mo"] <- as.mo("clostridium difficile")
microorganisms.codes[which(microorganisms.codes$code == "HA-"), "mo"] <- as.mo("haemophilus influenzae")
usethis::use_data(microorganisms.codes, overwrite = TRUE)
rm(microorganisms.codes)