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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9112</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9116</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -98,42 +98,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 64 256 0.002 1 0.001 64 0.25 1 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 8 8 0.0625 1 0.5 0.025 256 256 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.01 1 64 32 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 8 0.002 0.005 0.25 >=256 0.01 0.002 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 4 32 0.002 16 >=256 0.01 0.002 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.002 64 8 8 2 <=0.001 0.125 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 49 47 14 33 49 43 41 41 43 31 20 43 42 11 18 42 8 42 16 25 42 8 15 30 29</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 7 48 40 19 50 50 20 44 14 16 33 31 17 30 6 38 7 6 12 16 11 43 43 45</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S S I S I I S R S S I I S S I I S I R S S R I S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S R R S S R I S R S S R I I R S I R R R R I R S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.025 2 0.25 32 64 0.002 32 0.01 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.125 0.0625 64 128 0.002 128 128 1 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 0.005 0.001 4 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 0.25 16 8 0.001 4 16 0.025 0.25 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 0.005 0.0625 2 0.125 0.002 1 16 16 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.001 >=32 0.002 0.0625 0.125 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 2 1 >=16 8 1 >=16 >=16 2 1 2 1 1 8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 1 4 2 >=16 >=16 2 4 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 8 2 8 8 16 8 8 1 0.5 1 >=32 2 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=32 4 2 4 4 2 16 4 16 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.25 >=8 >=8 0.5 1 1 0.125 0.25 1 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.25 >=8 0.25 2 1 1 >=8 0.125 0.5 >=8 0.125 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.0625 <=0.0625 <=0.0625 0.5 0.125 0.25 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 0.125 0.125 0.5 4 <=0.0625 2 0.25 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 2 0.25 1 2 2 <=0.0625 2 <=0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 49 24 46 23 18 15 17 17 28 40 20 21 43 39 9 33 17 8 20 30 21 44 48 41</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 30 43 22 49 40 8 14 36 49 23 12 9 17 25 43 46 30 49 34 22 50 24 39 38 46</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 15 11 14 16 16 11 15 11 17 14 15 17 17 16 16 16 12 14 12 15 13 13 13 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 15 16 14 17 14 12 13 13 17 17 12 14 16 15 14 16 14 16 13 11 16 17 13 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 23 19 19 23 15 23 18 21 24 22 25 19 19 16 17 17 16 27 21 27 25 15 21 27</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 22 21 23 19 20 21 25 20 19 21 19 27 22 26 25 27 21 17 26 18 23 23 26 27</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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