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(v2.1.1.9195) add BTL-S, fix ranks in unknown microorganisms

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dr. M.S. (Matthijs) Berends
2025-03-13 14:30:14 +01:00
parent a7ef22a21e
commit 9aab129ea6
48 changed files with 1789 additions and 1710 deletions
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12
man/antimicrobial_selectors.Rd
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@@ -70,11 +70,13 @@ cephalosporins_4th(only_sir_columns = FALSE, return_all = TRUE, ...)
cephalosporins_5th(only_sir_columns = FALSE, return_all = TRUE, ...)
fluoroquinolones(only_sir_columns = FALSE, return_all = TRUE, ...)
fluoroquinolones(only_sir_columns = FALSE, only_treatable = TRUE,
return_all = TRUE, ...)
glycopeptides(only_sir_columns = FALSE, return_all = TRUE, ...)
isoxazolylpenicillins(only_sir_columns = FALSE, return_all = TRUE, ...)
isoxazolylpenicillins(only_sir_columns = FALSE, only_treatable = TRUE,
return_all = TRUE, ...)
lincosamides(only_sir_columns = FALSE, only_treatable = TRUE,
return_all = TRUE, ...)
@@ -96,13 +98,15 @@ phenicols(only_sir_columns = FALSE, return_all = TRUE, ...)
polymyxins(only_sir_columns = FALSE, only_treatable = TRUE,
return_all = TRUE, ...)
quinolones(only_sir_columns = FALSE, return_all = TRUE, ...)
quinolones(only_sir_columns = FALSE, only_treatable = TRUE,
return_all = TRUE, ...)
rifamycins(only_sir_columns = FALSE, return_all = TRUE, ...)
streptogramins(only_sir_columns = FALSE, return_all = TRUE, ...)
tetracyclines(only_sir_columns = FALSE, return_all = TRUE, ...)
tetracyclines(only_sir_columns = FALSE, only_treatable = TRUE,
return_all = TRUE, ...)
trimethoprims(only_sir_columns = FALSE, return_all = TRUE, ...)