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(v2.1.1.9195) add BTL-S, fix ranks in unknown microorganisms

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dr. M.S. (Matthijs) Berends
2025-03-13 14:30:14 +01:00
parent a7ef22a21e
commit 9aab129ea6
48 changed files with 1789 additions and 1710 deletions
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3
tests/testthat/test-sir.R
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@ -124,6 +124,9 @@ test_that("sir works", {
# Human -------------------------------------------------------------------
# these are used in the script
expect_true(all(c("B_GRAMN", "B_GRAMP", "B_ANAER-NEG", "B_ANAER-POS", "B_ANAER") %in% AMR::microorganisms$mo))
mics <- as.mic(2^c(-4:6)) # 0.0625 to 64 in factors of 2
expect_identical(
as.character(as.sir(mics,