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(v0.9.0.9023) EUCAST 2020 guidelines

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dr. M.S. (Matthijs) Berends
2020-02-14 19:54:13 +01:00
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NEWS.md
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# AMR 0.9.0.9022
## <small>Last updated: 10-Feb-2020</small>
# AMR 0.9.0.9023
## <small>Last updated: 14-Feb-2020</small>
### New
* Support for the newest EUCAST Clinical Breakpoint Tables v.10.0, valid from 2020-01-01 (use `as.rsi()` to transform MICs or disk zones)
* The repository of this package now contains a clean version of the EUCAST and CLSI guidelines from 2011-2020 to translate MIC and disk diffusion values to R/SI: https://gitlab.com/msberends/AMR/blob/master/data-raw/rsi_translation.txt. This **allows for machine reading these guidelines**, which is almost impossible with the Excel and PDF files distributed by EUCAST and CLSI. This file is updated automatically.
* Support for LOINC and SNOMED codes
* Support for LOINC codes in the `antibiotics` data set. Use `ab_loinc()` to retrieve LOINC codes, or use a LOINC code for input in any `ab_*` function:
```r
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mo_gramstain(115329001)
#> [1] "Gram-positive"
```
* The repository of this package now contains a clean version of the EUCAST and CLSI guidelines from 2011-2019 to translate MIC and disk diffusion values to R/SI: https://gitlab.com/msberends/AMR/blob/master/data-raw/rsi_translation.txt. This **allows for machine reading these guidelines**, which is almost impossible with the Excel and PDF files distributed by EUCAST and CLSI. This file is updated automatically.
### Changes
* The `as.mo()` function previously wrote to the package folder to improve calculation speed for previously calculated results. This is no longer the case, to comply with CRAN policies. Consequently, the function `clear_mo_history()` was removed.
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### Other
* Add a `CITATION` file
* Full support for the upcoming R 4.0
* Removed unnecessary `AMR::` calls
# AMR 0.9.0