mirror of
https://github.com/msberends/AMR.git
synced 2025-07-27 17:07:54 +02:00
Built site for AMR: 2.0.0.9041@08f7256
This commit is contained in:
@ -402,18 +402,18 @@ names or codes, this would have worked exactly the same way:</p>
|
||||
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
|
||||
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
|
||||
<span><span class="co">#> rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
|
||||
<span><span class="co">#> 1 R I R S R S</span></span>
|
||||
<span><span class="co">#> 2 R S I S S S</span></span>
|
||||
<span><span class="co">#> 3 R R I R I R</span></span>
|
||||
<span><span class="co">#> 4 I S I R R I</span></span>
|
||||
<span><span class="co">#> 5 R I R I R S</span></span>
|
||||
<span><span class="co">#> 6 I I I I S I</span></span>
|
||||
<span><span class="co">#> 1 S S I R R S</span></span>
|
||||
<span><span class="co">#> 2 S R I S S I</span></span>
|
||||
<span><span class="co">#> 3 S S I S R R</span></span>
|
||||
<span><span class="co">#> 4 I S R I S I</span></span>
|
||||
<span><span class="co">#> 5 I I R S R I</span></span>
|
||||
<span><span class="co">#> 6 R S I I R I</span></span>
|
||||
<span><span class="co">#> kanamycin</span></span>
|
||||
<span><span class="co">#> 1 S</span></span>
|
||||
<span><span class="co">#> 1 I</span></span>
|
||||
<span><span class="co">#> 2 I</span></span>
|
||||
<span><span class="co">#> 3 S</span></span>
|
||||
<span><span class="co">#> 4 I</span></span>
|
||||
<span><span class="co">#> 5 S</span></span>
|
||||
<span><span class="co">#> 4 S</span></span>
|
||||
<span><span class="co">#> 5 R</span></span>
|
||||
<span><span class="co">#> 6 I</span></span></code></pre></div>
|
||||
<p>We can now add the interpretation of MDR-TB to our data set. You can
|
||||
use:</p>
|
||||
@ -455,40 +455,40 @@ Unique: 5</p>
|
||||
<tr class="odd">
|
||||
<td align="left">1</td>
|
||||
<td align="left">Mono-resistant</td>
|
||||
<td align="right">3216</td>
|
||||
<td align="right">64.32%</td>
|
||||
<td align="right">3216</td>
|
||||
<td align="right">64.32%</td>
|
||||
<td align="right">3189</td>
|
||||
<td align="right">63.78%</td>
|
||||
<td align="right">3189</td>
|
||||
<td align="right">63.78%</td>
|
||||
</tr>
|
||||
<tr class="even">
|
||||
<td align="left">2</td>
|
||||
<td align="left">Negative</td>
|
||||
<td align="right">988</td>
|
||||
<td align="right">19.76%</td>
|
||||
<td align="right">4204</td>
|
||||
<td align="right">84.08%</td>
|
||||
<td align="right">986</td>
|
||||
<td align="right">19.72%</td>
|
||||
<td align="right">4175</td>
|
||||
<td align="right">83.50%</td>
|
||||
</tr>
|
||||
<tr class="odd">
|
||||
<td align="left">3</td>
|
||||
<td align="left">Multi-drug-resistant</td>
|
||||
<td align="right">464</td>
|
||||
<td align="right">9.28%</td>
|
||||
<td align="right">4668</td>
|
||||
<td align="right">93.36%</td>
|
||||
<td align="right">454</td>
|
||||
<td align="right">9.08%</td>
|
||||
<td align="right">4629</td>
|
||||
<td align="right">92.58%</td>
|
||||
</tr>
|
||||
<tr class="even">
|
||||
<td align="left">4</td>
|
||||
<td align="left">Poly-resistant</td>
|
||||
<td align="right">235</td>
|
||||
<td align="right">4.70%</td>
|
||||
<td align="right">4903</td>
|
||||
<td align="right">98.06%</td>
|
||||
<td align="right">255</td>
|
||||
<td align="right">5.10%</td>
|
||||
<td align="right">4884</td>
|
||||
<td align="right">97.68%</td>
|
||||
</tr>
|
||||
<tr class="odd">
|
||||
<td align="left">5</td>
|
||||
<td align="left">Extensively drug-resistant</td>
|
||||
<td align="right">97</td>
|
||||
<td align="right">1.94%</td>
|
||||
<td align="right">116</td>
|
||||
<td align="right">2.32%</td>
|
||||
<td align="right">5000</td>
|
||||
<td align="right">100.00%</td>
|
||||
</tr>
|
||||
|
Reference in New Issue
Block a user