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(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N

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dr. M.S. (Matthijs) Berends
2024-06-14 22:39:01 +02:00
parent de17de1be9
commit 9bf7584d58
57 changed files with 4375 additions and 135 deletions
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R/key_antimicrobials.R
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@@ -283,7 +283,7 @@ generate_antimcrobials_string <- function(df) {
function(x) {
x <- toupper(as.character(x))
x[x == "SDD"] <- "I"
# ignore "N" here, no use for determining first isolates
# ignore "NI" here, no use for determining first isolates
x[!x %in% c("S", "I", "R")] <- "."
paste(x)
}