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(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N

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dr. M.S. (Matthijs) Berends
2024-06-14 22:39:01 +02:00
parent de17de1be9
commit 9bf7584d58
57 changed files with 4375 additions and 135 deletions
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28
data-raw/microorganisms.codes.txt
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@ -558,6 +558,7 @@
"ACESPP" "B_ACTBCT"
"ACF" "F_ABSID"
"ACFSPP" "F_ABSID"
"ACG" "B_ACNTB_GULL"
"ACH" "B_ACHRMB"
"ACHCDC" "B_ACHRMB"
"ACHDEN" "B_ACHRMB_DNTR"
@ -633,6 +634,7 @@
"ACX" "B_ACDVR"
"ACXSPP" "B_ACDVR"
"ACY" "B_ARCBC_CRYR"
"ACZ" "B_ACNTB_BRZN"
"ADE" "B_ACHRMB_DNTR"
"ADF" "B_ACDVR_DLFL"
"ADH" "B_AERMN_DHKN"
@ -676,7 +678,7 @@
"AERURI" "B_AERCC_URIN"
"AERVER" "B_AERMN_VERN"
"AERVIR" "B_AERCC_VRDN"
"AES" "B_AERCC"
"AES" "B_AERCC_SNGN"
"AESSAN" "B_AERCC_SNGN"
"AESSPP" "B_AERCC"
"AESURI" "B_AERCC_URIN"
@ -782,6 +784,7 @@
"ANISPP" "AN_ANSKS"
"ANK" "AN_ANSKS"
"ANKSPP" "AN_ANSKS"
"ANL" "B_ACNTB_LCTC"
"ANNEST" "B_GRAMN"
"ANO" "B_ACNTB_NSCM"
"ANP" "B_ANRBS"
@ -856,6 +859,7 @@
"ARHSPP" "B_ANRRH"
"ARI" "B_SLMNL_ENTR_ARZN"
"ARM" "B_ATPBM_RIMA"
"ARN" "B_CRNBCT"
"ARO" "B_ACNTB_RDRS"
"AROSPP" "B_ACNTB"
"ARS" "F_ASPRG_RSTR"
@ -863,12 +867,13 @@
"ARTCUM" "B_ARTHR_CMMN"
"ARTSPP" "B_ARTHR"
"ASA" "B_AERMN_SLMN"
"ASB" "B_AERMN_SLMN_MSCD"
"ASB" "B_AERMN_VERN"
"ASC" "B_ACRCM"
"ASCSPP" "B_ACRCM"
"ASD" "B_ACNTB_SCHN"
"ASE" "B_ACNTB_SFRT"
"ASH" "B_AERMN_SCHB"
"ASK" "B_ARCBC_SKRR"
"ASN" "B_ANRBS_SCCN"
"ASO" "B_AERMN_SOBR"
"ASP" "F_ASPRG"
@ -1274,7 +1279,7 @@
"BVI" "B_BRTNL_VNSN"
"BVT" "B_BRKHL_VTNM"
"BVTSPP" "B_BRKHL"
"BVU" "B_BCTRD_VLGT"
"BVU" "B_PHCCL_VLGT"
"BWA" "B_BLPHL_WDSW"
"BXX" "B_SHGLL_BOYD"
"BYP" "B_BSPRA_PLSC"
@ -1390,6 +1395,7 @@
"CBE" "B_CTRDM_BJRN"
"CBI" "B_CTRDM_BFRM"
"CBK" "B_CTRBC_BRAK"
"CBM" "B_CRNBCT_MLTR"
"CBN" "F_CLDPH_BNTN"
"CBO" "B_CTRDM_BTLN"
"CBP" "F_CLDPH_BOPP"
@ -2117,6 +2123,7 @@
"ENMPOL" "P_ENTMB_PLCK"
"ENO" "B_EBCTRM_NDTM"
"ENP" "B_ENTRBC_NMPR"
"ENQ" "B_ENTRC_AQMR"
"ENR" "P_ENTRMN"
"ENT" "B_ENTRC"
"ENTAER" "B_ENTRBC_AERG"
@ -2147,6 +2154,7 @@
"ENTSPP" "B_ENTRBC"
"ENTTAY" "B_ENTRBC_TYLR"
"ENTVER" "AN_ENTRB_VRMC"
"ENU" "B_ENTRC_THLN"
"ENX" "B_ENTRBC_XNGF"
"ENZ" "P_EYTZN"
"EO2" "B_PRCCC_YEEI"
@ -2550,7 +2558,7 @@
"GVA" "B_GRDNR_VGNL"
"GVB" "UNKNOWN"
"GVC" "UNKNOWN"
"GVR" "B_MYCBC_LLRE_YNGN"
"GVR" "UNKNOWN"
"HA-" "B_HMPHL"
"HAA" "B_HLLLL"
"HAASPP" "B_HLLLL"
@ -3555,6 +3563,7 @@
"PAV" "B_AVBCT_AVIM"
"PBC" "B_PRVTL_BCCL"
"PBE" "B_PSTRL_BTTY"
"PBI" "B_PRBCT"
"PBL" "B_PNBCL_LARV"
"PBO" "F_PSDLL_BOYD"
"PBR" "B_PRBCT"
@ -3647,6 +3656,7 @@
"PHE" "B_PRVDN_HMBC"
"PHI" "F_CLDPH"
"PHISPP" "F_CLDPH"
"PHL" "B_PHCCL"
"PHM" "F_PHOMA"
"PHMSPP" "F_PHOMA"
"PHO" "F_PHOMA"
@ -3883,6 +3893,7 @@
"PSP" "B_PSTRL_MLTC_SPTC"
"PSPPRO" "B_PSDPRP_PNCM"
"PSPSPP" "B_PSDPRP"
"PSR" "B_PSDMN_GSSR"
"PSS" "B_PSDSC"
"PSSSPP" "B_PSDSC"
"PSSVUL" "B_PSDSC_VLNR"
@ -4093,7 +4104,7 @@
"SBO" "B_STRPT_BOVS"
"SBR" "B_SLMNL_BRND"
"SBT" "B_SLMNL_SBTR"
"SBV" "B_STRPT_ORLS_DNTS"
"SBV" "B_STRPT_BOVS"
"SBY" "F_STCHY"
"SC+" "B_STPHY_COPS"
"SC0BRE" "F_SCPLR_VCLS"
@ -4177,7 +4188,7 @@
"SGM" "B_MYCBC_SGM"
"SGMSPP" "B_STRPT"
"SGO" "B_STRPT_GRDN"
"SGP" "B_SLMNL_CHLR_CHLR"
"SGP" "B_SLMNL_GNRM"
"SGR" "B_SERRT_GRMS"
"SGS" "B_SMYCS_GRISS"
"SGU" "B_STRPT_PRSN"
@ -4370,6 +4381,7 @@
"SRC" "B_STRPT_CRST"
"SRE" "B_SLMNL_ENTR_ENTR"
"SRG" "B_STPHY_GNTS"
"SRH" "B_STRPT_PHOC"
"SRI" "B_SLMNL_ENTR_ENTR"
"SRM" "B_SPRLLM"
"SRMSPP" "B_SPRLLM"
@ -4377,7 +4389,7 @@
"SRP" "AN_SRCPT"
"SRT" "B_STRPT_RATT"
"SRU" "B_SERRT_RUBD"
"SS1" "B_STRPT_SNGN"
"SS1" "B_STRPT_GRPI"
"SS2" "B_STRPT_SNGN"
"SS3" "B_STRPT_SNGN"
"SSA" "B_STRPT_SLVR"
@ -4845,6 +4857,8 @@
"VEL" "B_VIBRI_CHLR"
"VFL" "B_VIBRI_FLVL"
"VFU" "B_VIBRI_FRNS"
"VGC" "B_VGCCC"
"VGS" "B_VGCCC_SLMN"
"VHI" "B_VIBRI_CHLR"
"VHO" "B_GRMNT_HLLS"
"VI-" "B_VIBRI"