P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-11 15:41:57 +02:00
Code Releases Activity

(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2024-06-14 22:39:01 +02:00
parent de17de1be9
commit 9bf7584d58
57 changed files with 4375 additions and 135 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
man/clinical_breakpoints.Rd
View File

@ -5,7 +5,7 @@
\alias{clinical_breakpoints}
\title{Data Set with Clinical Breakpoints for SIR Interpretation}
\format{
A \link[tibble:tibble]{tibble} with 29 883 observations and 13 variables:
A \link[tibble:tibble]{tibble} with 34 085 observations and 13 variables:
\itemize{
\item \code{guideline}\cr Name of the guideline
\item \code{type}\cr Breakpoint type, either "ECOFF", "animal", or "human"
@ -28,9 +28,9 @@ clinical_breakpoints
\description{
Data set containing clinical breakpoints to interpret MIC and disk diffusion to SIR values, according to international guidelines. This dataset contain breakpoints for humans, 7 different animal groups, and ECOFFs.
Currently available breakpoint guidelines for \strong{clinical microbiology} are EUCAST 2011-2023 and CLSI 2011-2023.
Currently available breakpoint guidelines for \strong{clinical microbiology} are EUCAST 2011-2024 and CLSI 2011-2024.
Currently available breakpoint guidelines for \strong{veterinary microbiology} are EUCAST 2021-2023 and CLSI 2019-2023.
Currently available breakpoint guidelines for \strong{veterinary microbiology} are EUCAST 2021-2024 and CLSI 2019-2024.
Use \code{\link[=as.sir]{as.sir()}} to transform MICs or disks measurements to SIR values.
}