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first inclusion of ITIS data

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-09-24 23:33:29 +02:00
parent df5d82fff3
commit 9c566585b0
29 changed files with 734 additions and 466 deletions
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14
tests/testthat/test-join_microorganisms.R
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@ -24,17 +24,17 @@ test_that("joins work", {
expect_true(nrow(unjoined) < nrow(full))
expect_equal(nrow(inner_join_microorganisms("ESCCOL")), 1)
expect_equal(nrow(inner_join_microorganisms("ESCCOL", by = c("mo" = "mo"))), 1)
expect_equal(nrow(inner_join_microorganisms("B_ESCHR_COL")), 1)
expect_equal(nrow(inner_join_microorganisms("B_ESCHR_COL", by = c("mo" = "mo"))), 1)
expect_warning(inner_join_microorganisms("Escherichia", by = c("mo" = "genus")))
expect_equal(nrow(left_join_microorganisms("ESCCOL")), 1)
expect_equal(nrow(left_join_microorganisms("B_ESCHR_COL")), 1)
expect_warning(left_join_microorganisms("Escherichia", by = c("mo" = "genus")))
expect_equal(nrow(semi_join_microorganisms("ESCCOL")), 1)
expect_equal(nrow(anti_join_microorganisms("ESCCOL")), 0)
expect_equal(nrow(semi_join_microorganisms("B_ESCHR_COL")), 1)
expect_equal(nrow(anti_join_microorganisms("B_ESCHR_COL")), 0)
expect_warning(right_join_microorganisms("ESCCOL"))
expect_warning(full_join_microorganisms("ESCCOL"))
expect_warning(right_join_microorganisms("B_ESCHR_COL"))
expect_warning(full_join_microorganisms("B_ESCHR_COL"))
})