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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9011</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9012</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,43 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 0.005 8 256 0.125 16 8 32 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 0.0625 16 0.0625 0.005 4 <=0.001 256 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 8 <=0.001 32 0.025 0.002 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 0.01 0.25 1 16 4 0.0625 0.005 0.5 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.025 256 128 32 0.01 4 0.005 0.001 2 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 4 16 0.125 0.01 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 39 32 46 15 26 43 36 23 7 12 6 19 47 14 12 23 19 41 49 12 41 34 23 49 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 43 40 49 24 32 42 15 28 36 39 23 9 34 41 26 47 41 46 41 44 16 44 41 9</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S S I R I S S I I I I S R S S I R I R R S I R S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S S R S S S R S I S R S S R R R S R I I I S S R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.0625 0.001 16 4 0.0625 0.25 1 0.001 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.002 0.0625 2 0.5 0.005 0.01 0.5 64 0.025 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.0625 0.01 2 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 64 0.002 0.125 0.01 0.25 16 0.125 0.0625 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 0.01 0.025 0.5 1 2 0.01 0.0625 0.001 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 0.25 0.025 0.001 64 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 4 16 <=0.5 8 1 16 1 32 <=0.5 <=0.5 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 1 2 32 32 2 16 2 4 2 4 8 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 2 4 2 0.25 2 8 0.5 0.5 2 0.25 8 16 0.5 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 0.5 16 16 2 0.25 16 4 0.25 2 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.125 2 0.125 >=16 0.0625 0.125 0.025 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.0625 0.125 4 0.5 >=16 2 1 8 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 8 4 0.5 1 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.25 1 <=0.125 4 <=0.125 0.25 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 16 <=0.125 8 0.5 2 0.25 4 16 <=0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 1 1 8 8 2 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 30 40 48 47 38 29 22 40 44 40 29 28 38 48 50 34 13 41 40 50 43 33 34 19 43</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 50 48 9 44 50 44 48 18 49 48 47 32 42 14 11 16 42 45 9 34 50 39 8 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 16 15 14 12 15 16 12 16 13 14 14 12 17 11 12 11 17 12 16 15 16 17 13 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 11 15 11 11 12 15 14 11 16 11 16 13 13 15 12 17 12 11 12 15 17 16 16 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 26 27 24 18 18 22 23 18 19 24 15 27 25 22 27 20 17 16 26 16 15 25 20 18</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 25 27 22 17 18 17 16 23 18 18 20 26 17 25 19 15 27 20 24 20 23 25 15 19</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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