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mirror of https://github.com/msberends/AMR.git synced 2025-07-09 15:01:51 +02:00

use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi

This commit is contained in:
2023-02-06 11:57:22 +01:00
parent 4b133d4c96
commit 9e99e66f01
69 changed files with 1670 additions and 650 deletions

View File

@ -73,6 +73,7 @@ S3method(asin,mic)
S3method(asinh,mic)
S3method(atan,mic)
S3method(atanh,mic)
S3method(barplot,antibiogram)
S3method(barplot,disk)
S3method(barplot,mic)
S3method(barplot,rsi)
@ -123,12 +124,14 @@ S3method(mean_amr_distance,mic)
S3method(mean_amr_distance,sir)
S3method(median,mic)
S3method(min,mic)
S3method(plot,antibiogram)
S3method(plot,disk)
S3method(plot,mic)
S3method(plot,resistance_predict)
S3method(plot,rsi)
S3method(plot,sir)
S3method(print,ab)
S3method(print,antibiogram)
S3method(print,av)
S3method(print,bug_drug_combinations)
S3method(print,custom_eucast_rules)
@ -216,6 +219,7 @@ export(aminoglycosides)
export(aminopenicillins)
export(amr_distance_from_row)
export(anti_join_microorganisms)
export(antibiogram)
export(antifungals)
export(antimicrobials_equal)
export(antimycobacterials)