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(v1.6.0.9028) new unit test flow

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dr. M.S. (Matthijs) Berends
2021-05-13 22:44:11 +02:00
parent 5b9fb8daf4
commit 9ed2f6490f
31 changed files with 108 additions and 99 deletions
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56
tests/testthat/test-first_isolate.R
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@ -121,28 +121,34 @@ test_that("first isolates work", {
col_date = "non-existing col",
col_mo = "mo"))
require("dplyr")
# if mo is not an mo class, result should be the same
expect_identical(example_isolates %>%
mutate(mo = as.character(mo)) %>%
first_isolate(col_date = "date",
col_mo = "mo",
col_patient_id = "patient_id",
info = FALSE),
example_isolates %>%
first_isolate(col_date = "date",
col_mo = "mo",
col_patient_id = "patient_id",
info = FALSE))
# support for WHONET
expect_message(example_isolates %>%
select(-patient_id) %>%
mutate(`First name` = "test",
`Last name` = "test",
Sex = "Female") %>%
first_isolate(info = TRUE))
if (suppressWarnings(require("dplyr"))) {
# if mo is not an mo class, result should be the same
expect_identical(example_isolates %>%
mutate(mo = as.character(mo)) %>%
first_isolate(col_date = "date",
col_mo = "mo",
col_patient_id = "patient_id",
info = FALSE),
example_isolates %>%
first_isolate(col_date = "date",
col_mo = "mo",
col_patient_id = "patient_id",
info = FALSE))
# support for WHONET
expect_message(example_isolates %>%
select(-patient_id) %>%
mutate(`First name` = "test",
`Last name` = "test",
Sex = "Female") %>%
first_isolate(info = TRUE))
# groups
x <- example_isolates %>% group_by(ward_icu) %>% mutate(first = first_isolate())
y <- example_isolates %>% group_by(ward_icu) %>% mutate(first = first_isolate(.))
expect_identical(x, y)
}
# missing dates should be no problem
df <- example_isolates
@ -185,10 +191,4 @@ test_that("first isolates work", {
# only one isolate, so return fast
expect_true(first_isolate(data.frame(mo = "Escherichia coli", date = Sys.Date(), patient = "patient"), info = TRUE))
# groups
x <- example_isolates %>% group_by(ward_icu) %>% mutate(first = first_isolate())
y <- example_isolates %>% group_by(ward_icu) %>% mutate(first = first_isolate(.))
expect_identical(x, y)
})