Data sets for download / own use
-27 May 2023
+22 June 2023
Source:vignettes/datasets.Rmd
datasets.Rmd
clinical_breakpoints
: Interpretation from MIC values
& disk diameters to SIR
-A data set with 18 271 rows and 11 columns, containing the following +
A data set with 42 599 rows and 12 columns, containing the following
column names:
guideline, method, site, mo,
rank_index, ab, ref_tbl, disk_dose,
-breakpoint_S, breakpoint_R, and uti.
This data set is in R available as clinical_breakpoints
,
after you load the AMR
package.
It was last updated on 20 April 2023 13:20:41 UTC. Find more info +
It was last updated on 22 June 2023 13:10:59 UTC. Find more info about the structure of this data set here.
Direct download links:
- Download as original
-R Data Structure (RDS) file (43 kB)
+R Data Structure (RDS) file (82 kB)
- Download as tab-separated
-text file (1.9 MB)
+text file (4.4 MB)
- Download as Microsoft
-Excel workbook (0.8 MB)
+Excel workbook (1.8 MB)
- Download as Apache
-Feather file (0.7 MB)
+Feather file (1.6 MB)
- Download as Apache
-Parquet file (88 kB)
+Parquet file (0.2 MB)
- Download as SAS
data (SAS) file (3.6 MB)
- Download as SAS
-transport (XPT) file (3.4 MB)
+transport (XPT) file (10.6 MB)
- Download as IBM
-SPSS Statistics data file (2.3 MB)
+SPSS Statistics data file (5.8 MB)
- Download as Stata -DTA file (3.3 MB) +DTA file (10.5 MB)
Source
This data set contains interpretation rules for MIC values and disk -diffusion diameters. Included guidelines are CLSI (2013-2022) and EUCAST -(2013-2022).
+diffusion diameters. Included guidelines are CLSI (2011-2023) and EUCAST +(2011-2023).Example content
guideline | @@ -989,11 +991,12 @@ diffusion diameters. Included guidelines are CLSI (2013-2022) and EUCASTdisk_dose | breakpoint_S | breakpoint_R | +ecoff | uti | ||||
---|---|---|---|---|---|---|---|---|---|
EUCAST 2022 | +EUCAST 2023 | MIC | F_ASPRG_MGTS | @@ -1005,10 +1008,11 @@ diffusion diameters. Included guidelines are CLSI (2013-2022) and EUCAST1 | 1 | +FALSE | |||
EUCAST 2022 | +EUCAST 2023 | MIC | F_ASPRG_NIGR | @@ -1020,10 +1024,11 @@ diffusion diameters. Included guidelines are CLSI (2013-2022) and EUCAST1 | 1 | +FALSE | |||
EUCAST 2022 | +EUCAST 2023 | MIC | F_CANDD_ALBC | @@ -1035,10 +1040,11 @@ diffusion diameters. Included guidelines are CLSI (2013-2022) and EUCAST1 | 1 | +FALSE | |||
EUCAST 2022 | +EUCAST 2023 | MIC | F_CANDD_DBLN | @@ -1050,10 +1056,11 @@ diffusion diameters. Included guidelines are CLSI (2013-2022) and EUCAST1 | 1 | +FALSE | |||
EUCAST 2022 | +EUCAST 2023 | MIC | F_CANDD_GLBR | @@ -1065,10 +1072,11 @@ diffusion diameters. Included guidelines are CLSI (2013-2022) and EUCAST1 | 1 | +FALSE | |||
EUCAST 2022 | +EUCAST 2023 | MIC | F_CANDD_KRUS | @@ -1080,6 +1088,7 @@ diffusion diameters. Included guidelines are CLSI (2013-2022) and EUCAST1 | 1 | +FALSE | iv | 25-30 mg/kg x 1 iv | -12 | +13 |
AMX | @@ -1473,7 +1483,7 @@ Breakpoint Tables’ v12.0 (2022).iv | 2 g x 6 iv | -12 | +13 | |||||
AMX | @@ -1484,7 +1494,7 @@ Breakpoint Tables’ v12.0 (2022).iv | 1 g x 3-4 iv | -12 | +13 | |||||
AMX | @@ -1495,7 +1505,7 @@ Breakpoint Tables’ v12.0 (2022).oral | 0.75-1 g x 3 oral | -12 | +13 | |||||
AMX | @@ -1506,7 +1516,7 @@ Breakpoint Tables’ v12.0 (2022).oral | 0.5 g x 3 oral | -12 | +13 | |||||
AMX | @@ -1517,7 +1527,7 @@ Breakpoint Tables’ v12.0 (2022).oral | 0.5 g x 3 oral | -12 | +13 |
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