diff --git a/.github/workflows/check-current-testthat.yaml b/.github/workflows/check-current-testthat.yaml index 08ef72be9..5ec22faa1 100644 --- a/.github/workflows/check-current-testthat.yaml +++ b/.github/workflows/check-current-testthat.yaml @@ -94,9 +94,13 @@ jobs: with: upload-snapshots: true build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' + artifact-name: 'AMR-{matrix.config.os}-r{matrix.config.r}-result' - uses: actions/upload-artifact@v4 with: name: testthat-snapshots - path: /Users/runner/work/AMR/AMR/check/**/*snaps + path: | + /Users/runner/work/AMR/AMR/check/*[.](zip|gz) + /Users/runner/work/AMR/AMR/check/**/*[.](zip|gz) + /Users/runner/work/AMR/AMR/check/**/**/*[.](zip|gz) if-no-files-found: warn diff --git a/.github/workflows/publish-to-pypi.yml b/.github/workflows/publish-to-pypi.yml index ed1945653..5c1d589d2 100644 --- a/.github/workflows/publish-to-pypi.yml +++ b/.github/workflows/publish-to-pypi.yml @@ -93,4 +93,5 @@ jobs: git rm -rf . || true git add . git commit -m "Python wrapper update" - git push origin python-wrapper --force + # git push origin python-wrapper --force + git push https://$GITHUB_PAT@github.com/msberends/AMR.git python-wrapper --force diff --git a/DESCRIPTION b/DESCRIPTION index 8184367f5..e0a8b0a78 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 2.1.1.9213 +Version: 2.1.1.9214 Date: 2025-03-16 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) diff --git a/NEWS.md b/NEWS.md index ebaf31a31..ad4ef8171 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 2.1.1.9213 +# AMR 2.1.1.9214 *(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support! Install this beta using [the instructions here](https://msberends.github.io/AMR/#latest-development-version).)* diff --git a/data-raw/gpt_training_text_v2.1.1.9213.txt b/data-raw/gpt_training_text_v2.1.1.9214.txt similarity index 99% rename from data-raw/gpt_training_text_v2.1.1.9213.txt rename to data-raw/gpt_training_text_v2.1.1.9214.txt index eb63f2764..8d0496d1c 100644 --- a/data-raw/gpt_training_text_v2.1.1.9213.txt +++ b/data-raw/gpt_training_text_v2.1.1.9214.txt @@ -1,6 +1,6 @@ This knowledge base contains all context you must know about the AMR package for R. You are a GPT trained to be an assistant for the AMR package in R. You are an incredible R specialist, especially trained in this package and in the tidyverse. -First and foremost, you are trained on version 2.1.1.9213. Remember this whenever someone asks which AMR package version you’re at. +First and foremost, you are trained on version 2.1.1.9214. Remember this whenever someone asks which AMR package version you’re at. Below are the contents of the NAMESPACE file, the index.md file, and all the man/*.Rd files (documentation) in the package. Every file content is split using 100 hypens. ----------------------------------------------------------------------------------------------------