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(v1.5.0.9037) quick test

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dr. M.S. (Matthijs) Berends
2021-03-08 00:13:13 +01:00
parent 68163e3089
commit a12975bc6e
3 changed files with 33 additions and 18 deletions
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8
tests/testthat/test-rsi.R
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@ -95,20 +95,20 @@ test_that("mic2rsi works", {
mo = "B_STRPT_PNMN",
ab = "AMP",
guideline = "EUCAST 2020")),
c("S", "S", "I", "I", "R"))
c("S", "S", "I", "I", "R"), info = pkg_env$strange)
# S. pneumoniae/amoxicillin in CLSI 2019: 2-8 ug/ml (R is 8 and > 8)
expect_equal(as.character(
as.rsi(x = as.mic(c(1, 2, 4, 8, 16)),
mo = "B_STRPT_PNMN",
ab = "AMX",
guideline = "CLSI 2019")),
c("S", "S", "I", "R", "R"))
c("S", "S", "I", "R", "R"), info = pkg_env$strange)
# cutoffs at MIC = 8
expect_equal(as.rsi(as.mic(2), "E. coli", "ampicillin", guideline = "EUCAST 2020"),
as.rsi("S"), info = paste0(as.mo("E. coli"), as.ab("ampicillin")))
as.rsi("S"), info = pkg_env$strange)
expect_equal(as.rsi(as.mic(32), "E. coli", "ampicillin", guideline = "EUCAST 2020"),
as.rsi("R"))
as.rsi("R"), info = pkg_env$strange)
expect_true(suppressWarnings(example_isolates %>%
mutate(amox_mic = as.mic(2)) %>%