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(v0.9.0.9016) Support SNOMED codes

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dr. M.S. (Matthijs) Berends
2020-01-27 19:14:23 +01:00
parent 42b079cdb7
commit a13c62e6e8
31 changed files with 456 additions and 342 deletions
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7
man/mo_property.Rd
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@ -15,6 +15,7 @@
\alias{mo_kingdom}
\alias{mo_type}
\alias{mo_gramstain}
\alias{mo_snomed}
\alias{mo_ref}
\alias{mo_authors}
\alias{mo_year}
@ -51,6 +52,8 @@ mo_type(x, language = get_locale(), ...)
mo_gramstain(x, language = get_locale(), ...)
mo_snomed(x, ...)
mo_ref(x, ...)
mo_authors(x, ...)
@ -85,6 +88,7 @@ mo_property(x, property = "fullname", language = get_locale(), ...)
\item An \code{\link{integer}} in case of \code{\link[=mo_year]{mo_year()}}
\item A \code{\link{list}} in case of \code{\link[=mo_taxonomy]{mo_taxonomy()}} and \code{\link[=mo_info]{mo_info()}}
\item A named \code{\link{character}} in case of \code{\link[=mo_url]{mo_url()}}
\item A \code{\link{double}} in case of \code{\link[=mo_snomed]{mo_snomed()}}
\item A \code{\link{character}} in all other cases
}
}
@ -141,11 +145,12 @@ mo_subspecies("E. coli") # ""
# colloquial properties ----------------------------------------------------
mo_name("E. coli") # "Escherichia coli"
mo_fullname("E. coli") # "Escherichia coli", same as mo_name()
mo_fullname("E. coli") # "Escherichia coli" - same as mo_name()
mo_shortname("E. coli") # "E. coli"
# other properties ---------------------------------------------------------
mo_gramstain("E. coli") # "Gram-negative"
mo_snomed("E. coli") # 112283007, 116395006, ... (SNOMED codes)
mo_type("E. coli") # "Bacteria" (equal to kingdom, but may be translated)
mo_rank("E. coli") # "species"
mo_url("E. coli") # get the direct url to the online database entry