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(v0.9.0.9016) Support SNOMED codes

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2020-01-27 19:14:23 +01:00
parent 42b079cdb7
commit a13c62e6e8
31 changed files with 456 additions and 342 deletions
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3
tests/testthat/test-mo.R
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@ -38,6 +38,7 @@ test_that("as.mo works", {
expect_equal(as.character(as.mo("Escherichia coli")), "B_ESCHR_COLI")
expect_equal(as.character(as.mo("Escherichia coli")), "B_ESCHR_COLI")
expect_equal(as.character(as.mo(22242416)), "B_ESCHR_COLI")
expect_equal(as.character(as.mo(112283007)), "B_ESCHR_COLI")
expect_equal(as.character(as.mo("Escherichia species")), "B_ESCHR")
expect_equal(as.character(as.mo("Escherichia")), "B_ESCHR")
expect_equal(as.character(as.mo("Esch spp.")), "B_ESCHR")
@ -240,7 +241,7 @@ test_that("as.mo works", {
expect_output(print(mo_uncertainties()))
# Salmonella (City) are all actually Salmonella enterica spp (City)
expect_equal(mo_name(c("Salmonella Goettingen", "Salmonella Typhimurium", "Salmonella Group A")),
expect_equal(suppressWarnings(mo_name(c("Salmonella Goettingen", "Salmonella Typhimurium", "Salmonella Group A"))),
c("Salmonella enterica", "Salmonella typhimurium", "Salmonella"))
# no virusses