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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9120</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9121</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,43 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.025 0.25 >=128 0.005 0.125 0.01 32 0.01 8 0.002 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 4 4 0.01 4 0.01 16 0.025 0.5 0.002 0.25 0.001 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=64 16 0.25 0.5 16 2 0.125 0.125 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 0.0625 16 <=0.001 <=0.001 >=64 32 0.01 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 >=64 0.005 4 1 0.01 32 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 43 50 33 10 21 20 26 34 15 43 40 36 46 30 50 46 31 50 44 28 42 19 10 45</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 25 43 6 40 45 43 47 21 21 35 44 19 41 11 20 25 39 16 47 35 49 40 12 6</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S R I I S S R I R S R I R S S S S R S S I S R I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I R I S R S I R I S R R S R R R I I S S R S I R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 16 0.5 64 0.25 >=128 4 1 >=128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 32 0.005 0.002 2 0.5 64 32 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 >=128 0.002 0.005 4 64 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 128 4 0.001 0.002 128 0.01 0.025 0.002 0.005 2 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 8 0.025 0.002 4 1 0.5 16 0.005 64 1 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.5 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 32 1 0.5 1 1 1 4 32 0.5 8 64 1 64 64 4 1 4 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 2 2 4 32 1 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 8 4 4 2 >=16 8 >=16 4 8 2 2 <=1 4 <=1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] <=1 <=1 8 4 >=16 >=16 2 <=1 8 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.125 0.25 0.125 0.5 0.5 0.25 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 2 0.25 0.5 <=0.0625 0.25 0.125 <=0.0625 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 0.125 0.125 4 0.25 0.5 0.125 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.25 4 0.025 0.5 2 >=8 4 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.025 >=8 0.5 0.5 0.025 0.125 0.0625 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 4 1 1 0.125 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 38 25 42 21 30 49 29 14 31 23 20 45 21 19 50 32 16 41 43 23 9 27 22 28</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 20 33 33 26 20 49 22 12 42 40 29 45 42 48 30 50 37 21 27 50 50 43 49 46</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 16 17 11 12 17 17 15 15 16 17 15 14 16 15 16 17 13 15 14 13 12 13 15 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 13 13 16 16 11 12 15 14 11 14 15 11 12 11 13 15 13 17 17 16 11 13 11 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 25 24 20 19 17 16 23 24 23 23 25 26 25 26 19 17 23 17 25 19 19 23 20 25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 16 21 16 18 26 19 21 19 18 16 19 17 18 19 21 18 23 26 25 18 19 24 23 22</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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