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@@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9013</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9014</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@@ -178,42 +178,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 8 0.005 1 <=0.002 0.25 2 2 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 0.025 128 32 128 4 0.25 <=0.002 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 128 <=0.002 2 <=0.002 0.025 0.0625 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 8 0.001 0.01 0.002 0.01 4 64 0.001 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] >=256 0.0625 64 32 2 0.01 128 0.002 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 2 128 128 128 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 30 36 49 27 28 21 45 21 47 48 20 6 47 11 47 33 26 11 48 36 23 46 8 47 33</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 8 25 21 29 42 27 20 13 48 11 35 32 36 30 34 12 19 43 42 15 46 46 34 48</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <rsi></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S R S S S S S I S S R R S S S S I R I S I R R S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S R S I S R I S R S S R R I I R R I R S I S S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.0625 4 8 4 0.5 64 0.002 64 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.01 >=128 64 0.25 16 0.002 0.025 0.125 64 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.002 16 1 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 16 <=0.001 <=0.001 0.002 >=256 >=256 0.01 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 >=256 0.005 0.5 0.01 0.5 2 16 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 64 0.125 1 128 0.025 32 128 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 >=32 2 16 8 >=32 8 4 >=32 2 8 2 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 8 2 1 4 16 >=32 >=32 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=1 8 16 4 <=1 2 16 8 8 16 <=1 8 <=1 <=1 4 2 4 2 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 2 4 4 8 <=1 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 <=0.125 >=8 2 1 1 4 <=0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 <=0.125 0.25 4 0.5 0.25 0.5 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.125 >=8 <=0.125 4 2 >=8 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.25 16 8 4 4 1 2 8 0.125 1 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 4 0.25 1 4 0.125 0.125 1 4 16 2 0.5 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 4 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 23 12 45 35 12 16 32 44 17 18 47 48 25 48 17 50 22 29 35 46 50 49 24 40</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 40 22 46 19 41 16 27 42 10 39 25 10 26 12 36 50 20 33 11 49 43 21 8 20</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 13 16 11 13 12 16 13 16 11 14 17 16 14 13 17 13 14 16 13 15 15 15 14 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 12 13 17 17 15 17 12 15 16 17 15 17 14 14 17 15 14 13 13 15 14 14 12 14</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 21 19 26 17 25 19 27 19 23 23 22 17 23 25 19 19 25 21 18 27 18 15 18 18</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 21 15 19 21 19 15 18 15 19 24 16 25 16 23 17 15 21 19 19 21 23 27 21 16</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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