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(v2.1.1.9190) antibiotics deprecation in antibiogram()

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dr. M.S. (Matthijs) Berends
2025-03-09 10:41:11 +01:00
parent c7af397edf
commit a2c2be23c1
26 changed files with 203 additions and 180 deletions
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R/proportion.R
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@ -58,7 +58,7 @@
#'
#' The function [proportion_df()] takes any variable from `data` that has an [`sir`] class (created with [as.sir()]) and calculates the proportions S, I, and R. It also supports grouped variables. The function [sir_df()] works exactly like [proportion_df()], but adds the number of isolates.
#' @section Combination Therapy:
#' When using more than one variable for `...` (= combination therapy), use `only_all_tested` to only count isolates that are tested for all antibiotics/variables that you test them for. See this example for two antimicrobials, Drug A and Drug B, about how [susceptibility()] works to calculate the %SI:
#' When using more than one variable for `...` (= combination therapy), use `only_all_tested` to only count isolates that are tested for all antimicrobials/variables that you test them for. See this example for two antimicrobials, Drug A and Drug B, about how [susceptibility()] works to calculate the %SI:
#'
#'
#' ```